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Lag0005728 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005728
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr6:27289530..27289900
RNA-Seq ExpressionLag0005728
SyntenyLag0005728
Gene Ontology termsGO:0010467 - gene expression (biological process)
GO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2868.48Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+PR +IQVT  LE RV  LK+QY AI +MMGP  S FGWN+ERKCIEAEKSVFDDWVK HP+A G+ NK F YF +L IVFG+D+A G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

TYK05757.1 60S ribosomal protein L35 [Cucumis melo var. makuwa]8.6e-2868.48Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+   +IQVTP LE RV ILK+QY  I EM+GP  SGFGWN+ERKCIEAEKSVF DWVK H +A G+ NK FPYF +L IVFG+DRA G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.7e-2868.48Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+PR +IQVT  LE RV  LK+QY AI +MMGP  S FGWN+ERKCIEAEKSVFDDWVK HP+A G+ NK F YF +L IVFG+D+A G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

XP_008777637.2 uncharacterized protein LOC103697538 [Phoenix dactylifera]1.1e-2758.51Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGEG
        M++KLP C ++  P +E  V +LK+QY AI EM+GP Y  FGWND  KC+ A+K V+D WVK HPHA G+ NK FPY+++L+IVFGKDR NGEG
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGEG

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]7.8e-2970.65Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+P  +IQVTP LE RV ILK+QY AIVEMMGP+ S FGWN++RKCIEAEK VFDD VK HP+A G+ NK FPYF +L IVFG+DRA G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like8.4e-2968.48Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+PR +IQVT  LE RV  LK+QY AI +MMGP  S FGWN+ERKCIEAEKSVFDDWVK HP+A G+ NK F YF +L IVFG+D+A G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

A0A5C7HLQ5 Uncharacterized protein2.7e-2756.84Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGEGV
        M +K+P C ++  P ++ R+ +LK+QY AI EM+GP+ SGFGWND+ KC+  EK VFD+WVK HP A G+ NK FPY++ L  VFGKDRANG+GV
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGEGV

A0A5D3BC95 Retrotransposon protein8.4e-2968.48Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+PR +IQVT  LE RV  LK+QY AI +MMGP  S FGWN+ERKCIEAEKSVFDDWVK HP+A G+ NK F YF +L IVFG+D+A G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

A0A5D3C1Q9 60S ribosomal protein L354.2e-2868.48Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        MKEK+   +IQVTP LE RV ILK+QY  I EM+GP  SGFGWN+ERKCIEAEKSVF DWVK H +A G+ NK FPYF +L IVFG+DRA G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

A0A6P5FXE5 uncharacterized protein LOC109718933 isoform X11.0e-2657.61Show/hide
Query:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        M EK+P C+++  P +E R  + KRQY AI EM+GP+ SGFGW+D+ KC+E +K+V+D+WVK HP+A G+  KSFPYF+ L+IVFGKDRA G
Subjt:  MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein1.2e-0628.57Show/hide
Query:  LEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG
        L+ R   L+R Y  I  ++    +GF W+  R  + A+  +++ +++ HP A     K+ P + NL  +FGK+ ++G
Subjt:  LEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANG

AT4G02210.1 unknown protein9.9e-0634.78Show/hide
Query:  GFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVF
        GF W+D R+ + A+  V+D+++K+HP +     KS P + +L +V+
Subjt:  GFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVF

AT4G02210.2 unknown protein9.9e-0634.78Show/hide
Query:  GFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVF
        GF W+D R+ + A+  V+D+++K+HP +     KS P + +L +V+
Subjt:  GFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVF

AT5G27260.1 unknown protein4.8e-0834.67Show/hide
Query:  RVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGE
        R+  LK QY + +++   + SGFGW+   K   A   V+ D++K HP+   +   +F +FD L I+FG+  A G+
Subjt:  RVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCAC
TTACAGTGGTTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAAGGTACACCCACATGCTCCAGGGATGACGAACAAGT
CATTCCCCTACTTCGACAACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGAAATTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTACAGAGTGATGATCCTAAAAAGGCAATACGGTGCCATTGTCGAAATGATGGGCCCCAC
TTACAGTGGTTTTGGGTGGAATGATGAGCGAAAGTGCATTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAAGGTACACCCACATGCTCCAGGGATGACGAACAAGT
CATTCCCCTACTTCGACAACCTAGCAATTGTGTTCGGGAAGGATAGGGCTAATGGAGAAGGTGTTTGA
Protein sequenceShow/hide protein sequence
MKEKLPRCDIQVTPTLEYRVMILKRQYGAIVEMMGPTYSGFGWNDERKCIEAEKSVFDDWVKVHPHAPGMTNKSFPYFDNLAIVFGKDRANGEGV