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Lag0005746 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005746
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr6:27998556..27999022
RNA-Seq ExpressionLag0005746
SyntenyLag0005746
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO98731.1 Retrotransposon gag protein [Corchorus capsularis]1.4e-0935.24Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        +SW+ L+ +FL+KY            I  + Q H E  +E+ +RF    ++ P+  ++E+ LI+ FYEGL P++R  +DSA GG  +  TP EAW ++  
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A+T
Subjt:  YRAST

OMO99627.1 Retrotransposon gag protein [Corchorus capsularis]1.4e-0935.24Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        +SW+ L+ +FL+KY            I  + Q H E  +E+ +RF    ++ P+  ++E+ LI+ FYEGL P++R  +DSA GG  +  TP EAW ++  
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A+T
Subjt:  YRAST

XP_020209331.2 uncharacterized protein LOC109794285 [Cajanus cajan]1.1e-0934.26Show/hide
Query:  PQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEI
        P+R +W E++ +FL+KY   +        I  + Q+++E  +++ +RF    ++ P   +SE+ LI+ FYEGL P +R M+D+A GG ++  TP  A ++
Subjt:  PQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEI

Query:  IAKYRAST
        IA   A+T
Subjt:  IAKYRAST

XP_020225090.1 uncharacterized protein LOC109806970 [Cajanus cajan]1.1e-0934.26Show/hide
Query:  PQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEI
        P+R +W E++ +FL+KY   +        I  + Q+++E  +++ +RF    ++ P   +SE+ LI+ FYEGL P +R M+D+A GG ++  TP  A ++
Subjt:  PQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEI

Query:  IAKYRAST
        IA   A+T
Subjt:  IAKYRAST

XP_031113946.1 uncharacterized protein LOC116017489 [Ipomoea triloba]2.4e-0935.24Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        ++W++L+++FL+KY   +        I  + Q + E  YE+ +RF    ++ PH  ++E+ LI+ FYEGL P +R M+D+A GG ++  TPD A  +IA 
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A++
Subjt:  YRAST

TrEMBL top hitse value%identityAlignment
A0A151RFI2 Retrotrans_gag domain-containing protein2.0e-0934.29Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        ++W++++ +FL+K+   +        I  + Q++ E  YE+ +RF+   +T P   +SE+ LI+ FYEGLT  NR M+D+A GG ++  TP+ A ++I+ 
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A+T
Subjt:  YRAST

A0A1R3JCA8 Retrotransposon gag protein2.5e-0934.29Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        +SW+ L+ +FL+KY            I  + Q H E  +++ +RF    ++ P+  ++E+ LI+ FYEGL P++R  +DSA GG  +  TP EAW ++  
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A+T
Subjt:  YRAST

A0A1R3JVE0 Retrotransposon gag protein6.7e-1035.24Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        +SW+ L+ +FL+KY            I  + Q H E  +E+ +RF    ++ P+  ++E+ LI+ FYEGL P++R  +DSA GG  +  TP EAW ++  
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A+T
Subjt:  YRAST

A0A1R3JY32 Retrotransposon gag protein6.7e-1035.24Show/hide
Query:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK
        +SW+ L+ +FL+KY            I  + Q H E  +E+ +RF    ++ P+  ++E+ LI+ FYEGL P++R  +DSA GG  +  TP EAW ++  
Subjt:  SSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGY-STVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWEIIAK

Query:  YRAST
          A+T
Subjt:  YRAST

A0A803MP09 Uncharacterized protein1.1e-0935.64Show/hide
Query:  NPQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRF-SGYSTVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWE
        N   ++W++L+  FLKK++ I  L +    I   +Q   E+FYE  +RF S     PH  + +  LI +FY GL+ +N++M+D++CGG+ +    DEAW+
Subjt:  NPQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRF-SGYSTVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTPDEAWE

Query:  I
        +
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATTTCCATGTTCAAGAATTCTACTCGAGTTGCTCCGAGAGGAAACCCCCAGAGATCTTCTTGGAGCGAGCTGAGAAGTATTTTCTTGAAGAAGTACCATCTGAT
CGCATTGTTGCTTGAAACCACTGGGATGATTGTCATTGTCACGCAAGTACATGAAGAGATGTTCTATGAGTTCGTGGACCGCTTCAGTGGATATTCCACGGTCCCTCACA
CCCCACTATCCGAGGAGTCCTTGATAGAAAACTTCTACGAAGGGTTGACTCCTTACAATAGAAGAATGTTAGATTCAGCTTGTGGTGGTGATGTGCTAGGTACGACACCC
GATGAGGCCTGGGAGATTATTGCAAAGTATCGAGCCAGTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATTTCCATGTTCAAGAATTCTACTCGAGTTGCTCCGAGAGGAAACCCCCAGAGATCTTCTTGGAGCGAGCTGAGAAGTATTTTCTTGAAGAAGTACCATCTGAT
CGCATTGTTGCTTGAAACCACTGGGATGATTGTCATTGTCACGCAAGTACATGAAGAGATGTTCTATGAGTTCGTGGACCGCTTCAGTGGATATTCCACGGTCCCTCACA
CCCCACTATCCGAGGAGTCCTTGATAGAAAACTTCTACGAAGGGTTGACTCCTTACAATAGAAGAATGTTAGATTCAGCTTGTGGTGGTGATGTGCTAGGTACGACACCC
GATGAGGCCTGGGAGATTATTGCAAAGTATCGAGCCAGTACTTGA
Protein sequenceShow/hide protein sequence
MPISMFKNSTRVAPRGNPQRSSWSELRSIFLKKYHLIALLLETTGMIVIVTQVHEEMFYEFVDRFSGYSTVPHTPLSEESLIENFYEGLTPYNRRMLDSACGGDVLGTTP
DEAWEIIAKYRAST