CuGenDBv2

Gene ID	Lag0005762
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon gag protein
Genome location	chr6:28845669..28847827
RNA-Seq Expression	Lag0005762
Synteny	Lag0005762
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.7e-21

60.4

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Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R S F+RLS+STSKK +PS S FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.7e-21

60.4

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Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R S F+RLS+STSKK +PS S FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.9e-21

60.4

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Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R STF+RLS+STSKK +PS S FDRLK+T+DQ +R+M  L+ K F E N D K+ S +PSRMKRK S+ INTEGSL +  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

KAA0065608.1 retrotransposon gag protein [Cucumis melo var. makuwa]

6.5e-21

59.41

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Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEE QC TST+TR STF+RLS+STSKK +PS S FDRLK+T+DQ +++M +L+ K F E N D K+ S +PSR KRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.9e-21

59.41

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Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R S F+RLS+STSKK +PS S FDRLK+T++Q KR+M + + K F E N D K+ S +PSRMKRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQ06 Retrotransposon gag protein

8.2e-22

60.4

Show/hide

Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R S F+RLS+STSKK +PS S FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

A0A5A7VDY3 Ty3-gypsy retrotransposon protein

1.4e-21

60.4

Show/hide

Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R STF+RLS+STSKK +PS S FDRLK+T+DQ +R+M  L+ K F E N D K+ S +PSRMKRK S+ INTEGSL +  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

A0A5D3BBF9 Gag protease polyprotein

8.2e-22

60.4

Show/hide

Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R S F+RLS+STSKK +PS S FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

A0A5D3CA53 Retrotransposon gag protein

3.1e-21

59.41

Show/hide

Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEE QC TST+TR STF+RLS+STSKK +PS S FDRLK+T+DQ +++M +L+ K F E N D K+ S +PSR KRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

A0A5D3D209 Retrotransposon gag protein

2.4e-21

59.41

Show/hide

Query:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF
        +SM   EEENQC TST+ R S F+RLS+STSKK +PS S FDRLK+T++Q KR+M + + K F E N D K+ S +PSRMKRK S+ INTEGSL V  RF
Subjt:  MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRF

Query:  V
        +
Subjt:  V

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTATGGTCGCAACAGAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
AATATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGCGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTCACGCGTTTCGTTGCAGTTCCTTCTCTTCAATTCCGAAGG
TTCTCACGCGTTTCGTTGCAATTCCTTCTCTTAGAGTTTGAAGGTTCTCACGTTGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACATTGCTGCACTGCA
GTTCCTTCTATCCAAGTTTGAAGGTTCTCACACATTTCGCTGCAGTTTCGTCTCTCCAAGTTTGAAGGTTGACGCACTTCGCTGCAGTTCCTTCTCCACAAGTTCGAAGG
TTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTCTACGCTATTGAGTTGTTCCTTCTCCAAGTTTGAAGGATCTTATGTTGTGCGTTGC
TGCATTGTTCCCTCTTCTCTCAAGTTCGAAGGTTCTCATACAGCTTCGTTTGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTACAGTTCCTTCTCTCC
AAGGTCGAAGTTCCTTGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTTGAAGGTTCTCACGCTACGTTGTTCGAAGGTTC
TTCCTCTTAACTGCATTGCATCACTGTTCCTTCAACAAGTTCGAAGGTTCTTACGTTGCAGCAGGAAAGGAGCCCAAGTGGGAAGGACATCATGTGTCCTTGGGCCGAGG
GACGTTGTAGCAACAAAAGTCCAAGGAGCACGTCGTGTCCTTGTACTCATGTTGAAAGACGTGGCAGCGGCAAAAGTCCAAGGAGCACGTCATGTCCTTGTACTAATGTT
GAAAGATGTGGCGGCAGCAAAAGTCCAAGGAACATGTCCTTGTACTCATGTTGAAAGACGTGGCGGCGGAAAAAGTCCAAGGAGCACGTCATGTCCTTGTTCTAATGATG
AAAGATGTGGCGGCGGCAAAGTCCAAGGAACAGTCCTTGTACTTATGCTGAAAGACGTGGCGGCGGTAAAAGTCCAAGGAGCACGTCATGTCCTTGTACTGATGCTGAAA
GATGTGGCGGCGACAAAAGTCCAAGAAACATGTCCTTGTACTCATGCTGAAAGACGTGGCGACGGAGTACAAAGAACATGTCCTTGTACTCATGCTGAAGGACGTGACAG
CGGTAAAGGAGCTCAAGTGGGAATGACATCATGTGTCCTTGGGCCGGAAAGTGTCGTAACAACAAAAGTCCAAAGACGTCATATGTCCTTAGACTAA

mRNA sequence

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Protein sequence

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MSMVATEEENQCSTSTFTRPSTFQRLSVSTSKKSQPSISVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSILINTEGSLKVLTRFVAVPSLQFRR
FSRVSLQFLLLEFEGSHVVSLQFLLSKFEGSHIAALQFLLSKFEGSHTFRCSFVSPSLKVDALRCSSFSTSSKVLTRFAAVPSLQVRGSLHSTLLSCSFSKFEGSYVVRC
CIVPSSLKFEGSHTASFEFLLPKFEGSHALRYSSFSPRSKFLVPSLQVRRFSRCFVVVPSLNLKVLTLRCSKVLPLNCIASLFLQQVRRFLRCSRKGAQVGRTSCVLGPR
DVVATKVQGARRVLVLMLKDVAAAKVQGARHVLVLMLKDVAAAKVQGTCPCTHVERRGGGKSPRSTSCPCSNDERCGGGKVQGTVLVLMLKDVAAVKVQGARHVLVLMLK
DVAATKVQETCPCTHAERRGDGVQRTCPCTHAEGRDSGKGAQVGMTSCVLGPESVVTTKVQRRHMSLD

Lag0005762 (gene) of Sponge gourd (AG-4) v1 genome