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Lag0005771 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005771
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationchr6:29386967..29392925
RNA-Seq ExpressionLag0005771
SyntenyLag0005771
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]7.8e-0443.96Show/hide
Query:  MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCP----QLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGH
        MRG   +V   +S LKGTT+LL+LK       L+ + P     LS       G + E  F    T+A+ RII  +QEF VSSGLR SYLGH
Subjt:  MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCP----QLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGH
TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]6.4e-0637.5Show/hide
Query:  KTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGHRLKYVSFTVNGVIKHGNFVSTSQPL
        K GRSEFH     P       P+ G  + +R+RA LT+A+ RI+ ++Q+F+VS GLRSSYLG  +          IK+    +++  L
Subjt:  KTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGHRLKYVSFTVNGVIKHGNFVSTSQPL
TrEMBL top hitse value%identityAlignment
A0A5D3CRT6 Uncharacterized protein3.8e-0443.96Show/hide
Query:  MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCP----QLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGH
        MRG   +V   +S LKGTT+LL+LK       L+ + P     LS       G + E  F    T+A+ RII  +QEF VSSGLR SYLGH
Subjt:  MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCP----QLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGH
A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass3.1e-0637.5Show/hide
Query:  KTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGHRLKYVSFTVNGVIKHGNFVSTSQPL
        K GRSEFH     P       P+ G  + +R+RA LT+A+ RI+ ++Q+F+VS GLRSSYLG  +          IK+    +++  L
Subjt:  KTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGHRLKYVSFTVNGVIKHGNFVSTSQPL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGCGGCGCGCCTTTGTTCACGTTCCGGAGTCAGCACTTAAGGGAACAACCTTTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGTAGGACTATG
TCCCCAGCTATCTACCTGGTGTTATCCCCAAAGTGGCAGGTCTATTGAGCGGCGTTTTAGGGCCACTCTCACCTTTGCAAATCAAAGGATAATCCCAGATAAACAGGAGT
TCATGGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTGAAATATGTCAGTTTCACGGTAAATGGCGTTATAAAGCATGGGAATTTCGTCTCAACTTCTCAA
CCTCTTGAGACGTCTCAGGACACTATTCCTGTGACAAATGAATTCCATATTTTAAAGAGCAATCAAGAATCTTCCGTTGAAGTATTCAGAGTCGTCAACGGAGGATGCCC
CTACTCACATGTCAATACACGAACGAACCAGGATCACGTCGTTTGCTTTAGCAAATTAAGCCCATGTAATGGTCAGGTTGTAGAACAATCCTCCCACTACATCGAGGCAC
TCTCAACTCTTGAGATAGATGTAACTAACCAGTTGTATCGGTCCTATCAACAACTCTTGTTAAAGGCAGAATCACCATTCTCCACAAATCACGCTTACAAAACTAGTAAA
TCAAATTTACTGTCTTTGGATAAGTCTTCTTTGGCTAAGCAAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAAT
TCTGCCCTTGGAGCCTCATCAGTGTCGAGAAGCTCGTCATACAGAGTCGAGACGCTACAACGTCAAGACGCTTGCTCAACAGTGTCGCGACGCTAGAGCAATCCTAGAAA
TATTTTCTAAGATTGAAGGGACAGCGTCCAGATGCTTGTTGCACAGCGTCGCGACACTAGGCAGTTTTCCAGAAATGAAATTTTCCAAATTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGCGGCGCGCCTTTGTTCACGTTCCGGAGTCAGCACTTAAGGGAACAACCTTTCTACTATCCCTAAAGACGGGTAGGAGTGAATTCCATCTTGTAGGACTATG
TCCCCAGCTATCTACCTGGTGTTATCCCCAAAGTGGCAGGTCTATTGAGCGGCGTTTTAGGGCCACTCTCACCTTTGCAAATCAAAGGATAATCCCAGATAAACAGGAGT
TCATGGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTGAAATATGTCAGTTTCACGGTAAATGGCGTTATAAAGCATGGGAATTTCGTCTCAACTTCTCAA
CCTCTTGAGACGTCTCAGGACACTATTCCTGTGACAAATGAATTCCATATTTTAAAGAGCAATCAAGAATCTTCCGTTGAAGTATTCAGAGTCGTCAACGGAGGATGCCC
CTACTCACATGTCAATACACGAACGAACCAGGATCACGTCGTTTGCTTTAGCAAATTAAGCCCATGTAATGGTCAGGTTGTAGAACAATCCTCCCACTACATCGAGGCAC
TCTCAACTCTTGAGATAGATGTAACTAACCAGTTGTATCGGTCCTATCAACAACTCTTGTTAAAGGCAGAATCACCATTCTCCACAAATCACGCTTACAAAACTAGTAAA
TCAAATTTACTGTCTTTGGATAAGTCTTCTTTGGCTAAGCAAGGTCCTCACCGGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGACAAT
TCTGCCCTTGGAGCCTCATCAGTGTCGAGAAGCTCGTCATACAGAGTCGAGACGCTACAACGTCAAGACGCTTGCTCAACAGTGTCGCGACGCTAGAGCAATCCTAGAAA
TATTTTCTAAGATTGAAGGGACAGCGTCCAGATGCTTGTTGCACAGCGTCGCGACACTAGGCAGTTTTCCAGAAATGAAATTTTCCAAATTTGGCTGA
Protein sequenceShow/hide protein sequence
MRGRRAFVHVPESALKGTTFLLSLKTGRSEFHLVGLCPQLSTWCYPQSGRSIERRFRATLTFANQRIIPDKQEFMVSSGLRSSYLGHRLKYVSFTVNGVIKHGNFVSTSQ
PLETSQDTIPVTNEFHILKSNQESSVEVFRVVNGGCPYSHVNTRTNQDHVVCFSKLSPCNGQVVEQSSHYIEALSTLEIDVTNQLYRSYQQLLLKAESPFSTNHAYKTSK
SNLLSLDKSSLAKQGPHRSFGSNSGLKRAKPERKMTILPLEPHQCREARHTESRRYNVKTLAQQCRDARAILEIFSKIEGTASRCLLHSVATLGSFPEMKFSKFG