; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005789 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005789
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr6:30258881..30261441
RNA-Seq ExpressionLag0005789
SyntenyLag0005789
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-2360.18Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR SAFQR+SM   EEENQC  ST  R SAF+RLS+STSKK  PSTS FD LK+T+ Q +R+M +L+ K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K++S + S
Subjt:  VNSDKKLQSSIPS

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-2359.29Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR   FQR+SM   EEENQC MST  R SAF+RLS+STSKK  PSTS FD LK+T+ Q +R+M + + K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K+ S +PS
Subjt:  VNSDKKLQSSIPS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2360.18Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR S FQR+SM   EEENQC  ST  R SAF+RLS+STSKK  PSTS FD LK+T+ Q +R+M +L+ K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K+ S +PS
Subjt:  VNSDKKLQSSIPS

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-2461.06Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR S FQR+SM   EEENQC MST TR SAF+RLS+S SKK  PSTS FD LK+T+ Q +R+M +L+ K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K+ S +PS
Subjt:  VNSDKKLQSSIPS

TYK19591.1 hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]3.1e-2357.52Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   +EVDN  K +QRTSVFDRIKP  TR   FQR+SM   EEENQC MST TR SAF++LS+STSKK  PST  F+CLK+T+ Q +R+M +L+VK F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N+D ++ S + S
Subjt:  VNSDKKLQSSIPS

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein1.5e-2360.18Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR SAFQR+SM   EEENQC  ST  R SAF+RLS+STSKK  PSTS FD LK+T+ Q +R+M +L+ K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K++S + S
Subjt:  VNSDKKLQSSIPS

A0A5A7TQ06 Retrotransposon gag protein6.8e-2460.18Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR S FQR+SM   EEENQC  ST  R SAF+RLS+STSKK  PSTS FD LK+T+ Q +R+M +L+ K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K+ S +PS
Subjt:  VNSDKKLQSSIPS

A0A5A7U974 Retrotransposon gag protein2.3e-2461.06Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR S FQR+SM   EEENQC MST TR SAF+RLS+S SKK  PSTS FD LK+T+ Q +R+M +L+ K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K+ S +PS
Subjt:  VNSDKKLQSSIPS

A0A5D3D209 Retrotransposon gag protein2.0e-2359.29Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   EEVDN  + +QRTSVFDRIKP TTR   FQR+SM   EEENQC  ST  R SAF+RLS+STSKK  PSTS FD LK+T+ Q KR+M + + K F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N D K+ S +PS
Subjt:  VNSDKKLQSSIPS

A0A5D3D7Q8 Uncharacterized protein1.5e-2357.52Show/hide
Query:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE
        Y   +EVDN  K +QRTSVFDRIKP  TR   FQR+SM   EEENQC MST TR SAF++LS+STSKK  PST  F+CLK+T+ Q +R+M +L+VK F E
Subjt:  YIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKRKMDNLEVKLFDE

Query:  VNSDKKLQSSIPS
         N+D ++ S + S
Subjt:  VNSDKKLQSSIPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTATGAGAAGGGTGAACA
AAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCT
CCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTGGACCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACAAGCGGTCAATCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACTTCCTTTACTCCAAGTACGAAGGTGCTCCTTCTG
CAAGTTCGAAGACTCTTACATTGCTGCGATGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGTTTCGCAAGTTCGAAGACTCTTACATTGCTGCGATGCAGTTCC
TTCTCTCCAAGTTCAAACGTTCTCACGTGTTGTTTGAAGGTTTTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAATGTTCTCACGCACTTCGCTGCAGTTCCT
TCTTCCTCCAAGTTTGAAGGTTCTCACATCACTTCGTTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGCGCTACGCGCTTCGCTGCTGCAGTTCGAAGG
TGCTCCTTCTGCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCCTTCTCTCCAAGTTCAAAGGTTCTCACGCCACTTTGTTGCAGTTCTTCCTCCAAGTTCGAA
GGTTCTCACGTGCTTCCCTGCTGCAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCTCACGCCACTTCGTTGCAGTTCTTTCTTCCTCCAAGTTCGAAGGTTCTCACGCCAC
TTCGTTGCAGTTCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCCCTGCTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGTGCTACGCTGCTGCAGTT
CCTTCCCTCCAAGTTCAAGTTCGAAGGTTCTCGCTGTTGCAGTTTCTCCCCAAGTCTGAAAGGTTTCTTCTGCGCTTCAAAGGATCTCATGGGAAGTTCTCACGTGCTTC
CCTGCTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGCGCTACGCTGCTGCAGTTCCTTCCCTTCCAAGTTCGAAGGTTCTCACGTGCTTCCCTACTGCA
GTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTCTCACGTGCTTCCCTGCTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGCGCTACGCTGCTGCAGTTCC
TTCCCTCCAAGTTCAAGTTCGAAGGTTCTCGCTGTTGCAGTTTCTCCCCAAGTCTGAAAGGTTTCTTTTGCGCTTCAAAGGATCTCATGGGAAGTATGTATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTATGAGAAGGGTGAACA
AAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCT
CCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTGGACCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACAAGCGGTCAATCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACTTCCTTTACTCCAAGTACGAAGGTGCTCCTTCTG
CAAGTTCGAAGACTCTTACATTGCTGCGATGCAGTTCCTTCTCTCCAAGTTCAAAGGTTCTCATGCGTTTCGCAAGTTCGAAGACTCTTACATTGCTGCGATGCAGTTCC
TTCTCTCCAAGTTCAAACGTTCTCACGTGTTGTTTGAAGGTTTTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAATGTTCTCACGCACTTCGCTGCAGTTCCT
TCTTCCTCCAAGTTTGAAGGTTCTCACATCACTTCGTTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGCGCTACGCGCTTCGCTGCTGCAGTTCGAAGG
TGCTCCTTCTGCAAGTTCGAAGGCTCTTACATTGCTGCGATGCAGTTCCCTTCTCTCCAAGTTCAAAGGTTCTCACGCCACTTTGTTGCAGTTCTTCCTCCAAGTTCGAA
GGTTCTCACGTGCTTCCCTGCTGCAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCTCACGCCACTTCGTTGCAGTTCTTTCTTCCTCCAAGTTCGAAGGTTCTCACGCCAC
TTCGTTGCAGTTCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCCCTGCTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGTGCTACGCTGCTGCAGTT
CCTTCCCTCCAAGTTCAAGTTCGAAGGTTCTCGCTGTTGCAGTTTCTCCCCAAGTCTGAAAGGTTTCTTCTGCGCTTCAAAGGATCTCATGGGAAGTTCTCACGTGCTTC
CCTGCTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGCGCTACGCTGCTGCAGTTCCTTCCCTTCCAAGTTCGAAGGTTCTCACGTGCTTCCCTACTGCA
GTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTCTCACGTGCTTCCCTGCTGCAGTTCCTTCCTCCAAGTTCAAGTTCGAAGGTTTCTCACGCGCTACGCTGCTGCAGTTCC
TTCCCTCCAAGTTCAAGTTCGAAGGTTCTCGCTGTTGCAGTTTCTCCCCAAGTCTGAAAGGTTTCTTTTGCGCTTCAAAGGATCTCATGGGAAGTATGTATCTTAA
Protein sequenceShow/hide protein sequence
MLNKSFSKNFHKKEKENFATSYYIDVEEVDNYEKGEQRTSVFDRIKPPTTRPSAFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKTGPSTSVFDCLKVTSGQSKR
KMDNLEVKLFDEVNSDKKLQSSIPSLPLLQVRRCSFCKFEDSYIAAMQFLLSKFKGSHAFRKFEDSYIAAMQFLLSKFKRSHVLFEGFHAASLQFLPPSSNVLTHFAAVP
SSSKFEGSHITSLQFLPPSSSSKVSHALRASLLQFEGAPSASSKALTLLRCSSLLSKFKGSHATLLQFFLQVRRFSRASLLQFLLPPSSKVLTPLRCSSFFLQVRRFSRH
FVAVLPPSSKVLTCFPAAVPSSKFKFEGFSRATLLQFLPSKFKFEGSRCCSFSPSLKGFFCASKDLMGSSHVLPCCSSFLQVQVRRFLTRYAAAVPSLPSSKVLTCFPTA
VPSSKFKFEGSHVLPCCSSFLQVQVRRFLTRYAAAVPSLQVQVRRFSLLQFLPKSERFLLRFKGSHGKYVS