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Lag0005812 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005812
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:30874537..30875519
RNA-Seq ExpressionLag0005812
SyntenyLag0005812
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]2.9e-1038.64Show/hide
Query:  GQQDRGAG---------VQKADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCS
        G  DR +G         VQ+ + ++DG+   K LRVKVK+NI +PL+RG+++++  +  +SW    YE LP+FCY C  + HV ++C+
Subjt:  GQQDRGAG---------VQKADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCS

KAE8817564.1 hypothetical protein D1007_04663 [Hordeum vulgare]8.3e-1043.75Show/hide
Query:  GQQDRGAG-VQKADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCS
        G  DR  G V + ++ DD R   + LRVKV+I+I +PL+RG +++ G K +E W    YE LP FCY C  +GH  K+C+
Subjt:  GQQDRGAG-VQKADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCS

KAF0892003.1 hypothetical protein E2562_012483 [Oryza meyeriana var. granulata]8.3e-1035.51Show/hide
Query:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISL
        + D++D+   S + LRVKV+I+IL+PL+ G  + VG   E+ W  + YE LPDFCY+C  +GH  K C+ +          + G++ +I P+  K E+S+
Subjt:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISL

Query:  MEQVTEG
          + ++G
Subjt:  MEQVTEG

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]1.3e-1052.94Show/hide
Query:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDC
        + DLE+D   + + LRVKV+I I +PL RG ++ VG  A+E W  ITYE LPDFCY+C R+GH  K C
Subjt:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDC

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.7e-1052.94Show/hide
Query:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDC
        + DLE+D   + + LRVKV+I I +PL RG ++ VG  A+E W  ITYE LPDFCY+C R+GH  K C
Subjt:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDC

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein7.6e-0937.84Show/hide
Query:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISLME
        D EDDG      LR+KVKI+I +PL+RG LL+     ++ W  I YE LP+FCY C  LGHV K+C    ++    +Q   G   +++P   KG+    +
Subjt:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISLME

Query:  QVTEGAAKEEG
        + +EG +   G
Subjt:  QVTEGAAKEEG

A0A6G1BXB4 zf-CCHC_4 domain-containing protein4.0e-1035.51Show/hide
Query:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISL
        + D++D+   S + LRVKV+I+IL+PL+ G  + VG   E+ W  + YE LPDFCY+C  +GH  K C+ +          + G++ +I P+  K E+S+
Subjt:  KADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISL

Query:  MEQVTEG
          + ++G
Subjt:  MEQVTEG

B9G5C7 Reverse transcriptase domain-containing protein7.6e-0946.38Show/hide
Query:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEE
        DLE+DG    + LR+K++I+I +PL+RG  L VG+     W  + YE LPDFCYIC  +GH  K C ++
Subjt:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEE

Q2QQV8 Retrotransposon protein, putative, unclassified7.6e-0946.38Show/hide
Query:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEE
        DLE+DG    + LR+K++I+I +PL+RG  L VG+     W  + YE LPDFCYIC  +GH  K C ++
Subjt:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEE

Q8S6P1 Putative reverse transcriptase7.6e-0946.38Show/hide
Query:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEE
        DLE+DG    + LR+K++I+I +PL+RG  L VG+     W  + YE LPDFCYIC  +GH  K C ++
Subjt:  DLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGITYEKLPDFCYICERLGHVLKDCSEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGGAAGAAATAGAGCAAAGGTTTGGGAAGCTGAAGCTTACGGAAGCAGAGAAAGAAAAGGTAGCAAGAGTAGAAGATGAAGAACTGGCTACAACGAATAGAAA
TCTGGAAAACTCACTGGTGTGCAAAGTTTTCACAGAAAAAAAATGTGAAGGGGGTCAGCAAGATAGAGGAGCTGGAGTTCAGAAAGCAGACCTGGAAGATGATGGCAGGA
AGTCTGAGAAGACATTACGAGTTAAGGTGAAGATTAATATCCTCCAACCGCTGGTAAGAGGTGCTCTTCTGAAAGTGGGATCAAAAGCAGAGGAAAGCTGGAGTGGAATT
ACTTACGAAAAGCTACCTGACTTTTGCTACATATGCGAAAGATTGGGGCATGTGTTAAAAGATTGTAGCGAGGAAGAGGATGATTCTACAGATGATAGGCAGTCTGAAGG
GGGGAAAGACAATCAAATTTCCCCTGAGCTGAACAAGGGGGAAATCAGTTTGATGGAGCAGGTGACTGAAGGGGCAGCTAAAGAAGAAGGGGACAGGGCAGAGAGGCACC
ATGGCAGACAGACGGCGGTGAGCATCACTATTCTGACGGAACCGCAAGAGAAGAGACCAAACCTCGAGAAAAAAGAGTCGTTAACTCATAATAAGGAGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGGAAGAAATAGAGCAAAGGTTTGGGAAGCTGAAGCTTACGGAAGCAGAGAAAGAAAAGGTAGCAAGAGTAGAAGATGAAGAACTGGCTACAACGAATAGAAA
TCTGGAAAACTCACTGGTGTGCAAAGTTTTCACAGAAAAAAAATGTGAAGGGGGTCAGCAAGATAGAGGAGCTGGAGTTCAGAAAGCAGACCTGGAAGATGATGGCAGGA
AGTCTGAGAAGACATTACGAGTTAAGGTGAAGATTAATATCCTCCAACCGCTGGTAAGAGGTGCTCTTCTGAAAGTGGGATCAAAAGCAGAGGAAAGCTGGAGTGGAATT
ACTTACGAAAAGCTACCTGACTTTTGCTACATATGCGAAAGATTGGGGCATGTGTTAAAAGATTGTAGCGAGGAAGAGGATGATTCTACAGATGATAGGCAGTCTGAAGG
GGGGAAAGACAATCAAATTTCCCCTGAGCTGAACAAGGGGGAAATCAGTTTGATGGAGCAGGTGACTGAAGGGGCAGCTAAAGAAGAAGGGGACAGGGCAGAGAGGCACC
ATGGCAGACAGACGGCGGTGAGCATCACTATTCTGACGGAACCGCAAGAGAAGAGACCAAACCTCGAGAAAAAAGAGTCGTTAACTCATAATAAGGAGGGTTAG
Protein sequenceShow/hide protein sequence
MEKEEIEQRFGKLKLTEAEKEKVARVEDEELATTNRNLENSLVCKVFTEKKCEGGQQDRGAGVQKADLEDDGRKSEKTLRVKVKINILQPLVRGALLKVGSKAEESWSGI
TYEKLPDFCYICERLGHVLKDCSEEEDDSTDDRQSEGGKDNQISPELNKGEISLMEQVTEGAAKEEGDRAERHHGRQTAVSITILTEPQEKRPNLEKKESLTHNKEG