; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005844 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005844
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:31755103..31756519
RNA-Seq ExpressionLag0005844
SyntenyLag0005844
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006487889.1 uncharacterized protein LOC102617714 [Citrus sinensis]3.9e-3224.43Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL----
        MSVFKLP  +CEDI +  A+FWWGSS +++ IHW KWEKLC  K  GG+ FR+   FNQALIAKQ  R+I +P SL    LK   +K   +   E     
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL----

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------ALNNSIPTRRNLY------TTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWI
                A+ N +PT  NL+      + +C RC  + E   H L+ C  A+ +W+     + I+            E+      KE++LI   CW IW 
Subjt:  --------ALNNSIPTRRNLY------TTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWI

Query:  DKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNL---DSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLD
         +N  + E     N   +  +     E   D+    + P   +      +  Q W+ PP  W KINVDAA   +    G+G++ R+S G +  A+     
Subjt:  DKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNL---DSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLD

Query:  LDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI
                E +A++ G+K A   GF  +++++D  + +
Subjt:  LDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI

XP_011470556.1 PREDICTED: uncharacterized protein LOC105353255 [Fragaria vesca subsp. vesca]7.8e-3327.97Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGD----------
        M+ + LP G C+D+ +  A  WWG + EK +IHW  WE+LC PK  GGL F+ +  FN A++AKQ  R+I N  SL     K IYF              
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGD----------

Query:  -------------MKNAEL----------ALNNSIPTRRNLY------TTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRW-FE
                     + NA++          +  N +PTR NL          C  C    E   H+ + CP AQ+ W       +     NH     W   
Subjt:  -------------MKNAEL----------ALNNSIPTRRNLY------TTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRW-FE

Query:  LHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIG
        L   ++      +    W+IW ++N  + E          +    +L E+   N+++  +      ++   + W  P   W K + D A+ +   R G G
Subjt:  LHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIG

Query:  ILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCL
        ++ RD  G  +  +   L     P  AEL A+LEGLKLA +L   K++ ++DCL
Subjt:  ILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCL

XP_015382715.1 uncharacterized protein LOC107175626 [Citrus sinensis]8.4e-3529.84Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNN
        MSVF+L KG+C+DI +  A+FWWGS +++  IHW +W+K+   K  GGL FR++  FNQAL+AKQ  R++  P  L    L+  Y+K     N  +  N 
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNN

Query:  SIPTRRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHN
        S   +  L+                ++ K  K  ++   TF+H  +      S+      L S     E +L+   CW IW  +N ++ E+      I  
Subjt:  SIPTRRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHN

Query:  IWIKNYLVEYLQDNSNNSRSPACNLDSIDHM--QGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKL
        ++        L+      ++   ++ +   +  Q WS PP N LK+NVDAA  ++  ++G+G + RDS G +  A    +    D   AE +AI  GL++
Subjt:  IWIKNYLVEYLQDNSNNSRSPACNLDSIDHM--QGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKL

Query:  AFSLGFGKVMVDSDC
        A       ++V++DC
Subjt:  AFSLGFGKVMVDSDC

XP_015383853.1 uncharacterized protein LOC107176237 [Citrus sinensis]1.4e-3729.46Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNN
        MSVFKLP G+C+DI +  A+FWW S ++K+ IHW +W K+   K  GGL FRE+  FN+AL+AKQ  R++  P  L T  LK  Y+KE D   A    N 
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNN

Query:  SIPTRR-----------------NLYTTMC----------------------------------PRCPEEW-ESTDHILIKCPKAQDIWKLTFDHDLIKA
        S   R                  N Y ++                                   PR  E+  E+T H L+ C  A+ +W+          
Subjt:  SIPTRR-----------------NLYTTMC----------------------------------PRCPEEW-ESTDHILIKCPKAQDIWKLTFDHDLIKA

Query:  DFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHE-KAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVD
          N    +   E+   ++  +++++   CW IW  KN  + E K + P  +  I     +VE  +      +       S  + Q WS PP N  K+NVD
Subjt:  DFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHE-KAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVD

Query:  AAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI
        AA      + G+G++ RDS   ++ A+        D   AE +A+  GL +A S  F  +MV+SDC + +
Subjt:  AAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI

XP_042952220.1 uncharacterized protein LOC122289300 [Carya illinoinensis]3.5e-3329.08Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL----
        MSVFKLP  + + I +   +FWWG   ++++IHW   EK+   K  GG+ FR++E FN+A+++KQ   +I +P SLA+  LK  YF       A+     
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL----

Query:  --------ALNNSIPTRRNLY------TTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFE-LHSVISSKEMQ---LIARTCW
                A + ++PT+ NL+        +CP C  E E+  H L  C  A D+W       L K   + +    +FE +    S  E+Q   LIAR  W
Subjt:  --------ALNNSIPTRRNLY------TTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFE-LHSVISSKEMQ---LIARTCW

Query:  AIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFL
          W   + + ++K   P+ I  +     ++E + +     +S   +         W++PP  W K+N D A      +I IG++ RD  G +        
Subjt:  AIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFL

Query:  DLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQ
         +  DP +AE    L   +LA  LG  +++++ D LQ
Subjt:  DLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQ

TrEMBL top hitse value%identityAlignment
A0A1R3J6U3 Ribonuclease H1.0e-3029.87Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNN
        MS F+ PK    D+    A FWWGSS  K+RIHW  W+ LC  K  GGL FR+ E FN AL+AKQ  R+I + RSL    LK  YF++     A+L  N 
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNN

Query:  SIPTRRNLYTTMCPRCPEEWES---------TDHILIKCPKAQDI-----------WKLTF------DHDLIKADFNHSFADRWFE--LHSVISSKE---
        S   R  L      +    W            D  + K P  Q +            K+ F      D+DL++  F      R     LH   S  +   
Subjt:  SIPTRRNLYTTMCPRCPEEWES---------TDHILIKCPKAQDI-----------WKLTF------DHDLIKADFNHSFADRWFE--LHSVISSKE---

Query:  ---------------MQLIARTCWAIWIDKNNVVHEKAIPP------------NDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWL
                       ++L+    W IW++ N V+HEK                 ++ N+WI+N L                 +D  + +Q W  P    +
Subjt:  ---------------MQLIARTCWAIWIDKNNVVHEKAIPP------------NDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWL

Query:  KINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI
        KINVDA++       G+G++CRD+ G +   + S ++   D   AE+ AI  G+ LA   G+    V+SDCL AI
Subjt:  KINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI

A0A2Z6M5F7 Uncharacterized protein4.6e-3128.12Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWW----GSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL
        MS+F LP  + +DI +    FWW     ++   K IHW  W++L +PK  GGL FR  E FN+A++AKQ   ++ NP SL    +K  YF    +  A L
Subjt:  MSVFKLPKGVCEDIMRKFAQFWW----GSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL

Query:  ALNNSIPTRRNL----------------------YTTMCPRCPEEWESTDHILIKCPKAQDIW-KLTFDHDLIKADFNHS-FADRWFELHSVISSKEMQL
          N S   +  L                          CP   ++ E   HI  +C  A+D W        L  A +  S   DR F + S  SS  +  
Subjt:  ALNNSIPTRRNL----------------------YTTMCPRCPEEWESTDHILIKCPKAQDIW-KLTFDHDLIKADFNHS-FADRWFELHSVISSKEMQL

Query:  IARTCWAIWIDKNNVV-HEKAIPPNDI----HNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSF
        +A   W+IW ++N+ + ++    P  I     + W   Y V  LQ NS +  + A        +  W  P + W+K NVD A+     R  +G+  RD+ 
Subjt:  IARTCWAIWIDKNNVV-HEKAIPPNDI----HNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSF

Query:  GSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSD
        G      T +      P   E   +L  ++ A   G  +V  +SD
Subjt:  GSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSD

A0A803NI26 Uncharacterized protein1.7e-3327.38Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAE-----
        MS FKL K  C  +    AQFWWGS+ +KK+ HW KW+ LC  K  GGL FR    FNQAL+AKQ  R+  NP SL +  LK  YF   D   A      
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAE-----

Query:  ---------------------------------------------------------------------------------------LALNNSIP-----
                                                                                                 L N++P     
Subjt:  ---------------------------------------------------------------------------------------LALNNSIP-----

Query:  -TRRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLT-FDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEK--AIPPNDIH
          R+ + +  C  C   WES  H L+ C  A+ +W+ + F  D  +A       D    L ++ +  +M+ I    W IW D+NN++H+K    PP    
Subjt:  -TRRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLT-FDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEK--AIPPNDIH

Query:  N--IWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLK
           ++++N+       ++ N R       S+   Q W +PP   LK+NVDAA  S   R+G+G + RDS G +Q A +  +  +F     E KAI   L 
Subjt:  N--IWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLK

Query:  LAFSLGFGKVMVDSDCLQAI
         A +      +V+SDCL  +
Subjt:  LAFSLGFGKVMVDSDCLQAI

A0A803NM27 Uncharacterized protein1.3e-3023.79Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNA------
        MS FKLP   C +I    + FWWGS+ +KK+IHW +W+ LC  K  GGL FR    FNQAL+AKQ  R+  NP SL    LK  YF   D  +A      
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNA------

Query:  -----------EL---------------------------------------------------------------------------------------
                   EL                                                                                       
Subjt:  -----------EL---------------------------------------------------------------------------------------

Query:  ---------------------------------------------------ALNNSIPT------RRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKL
                                                           A++N++P       R++L +  C  C   WES  H +  C  A+ +WK+
Subjt:  ---------------------------------------------------ALNNSIPT------RRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKL

Query:  TFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPV
               KA  +    D  F++    +  E+++I  T W+IW D+NNV+H K      + +    ++L  +      +  +     D+    + W+ PP 
Subjt:  TFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPV

Query:  NWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCL
        N LK+NVDAA+     RIG G + RDS G+++ A +  +D    P   E K +   LK A  L F   +V++D L
Subjt:  NWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCL

A0A803QAH8 Uncharacterized protein2.6e-3425Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL----
        MS FKLP   C +I    + FWWGS+ +KK+IHW +W+ LC  K  GGL FR    FNQAL+AKQ  R+  NP SL    LK  YF   D  +A      
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL----

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------ALNNSIPT------RRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEM
                            A++N++P       R++L +  C  C   WES  H +  C  A+ +WK+       KA  +    D  F++    +  E+
Subjt:  --------------------ALNNSIPT------RRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEM

Query:  QLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSL
        ++I  T W+IW D+NNV+H K      + +    ++L  +   +  +  +     D+    + W+ PP  +LK+NVDAA+     RIG G + RDS G +
Subjt:  QLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSL

Query:  QGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCL
        + A +  +D    P   E K +   LK A  L F   MV++D L
Subjt:  QGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.5e-1040Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIY
        MS   LP+ +   + +    F WGS+ EKK+ H  KW K+C PKK GGL  R  +  N+ALI+K   R++    SL T+ L+  Y
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIY

P93295 Uncharacterized mitochondrial protein AtMg003103.1e-1638.68Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKK-LGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALN
        MS F+L K +C+ +     +FWW S + K++I W  W+KLC  K+  GGL FR++  FNQAL+AKQ  R+I  P +L +  L++ YF    M    +   
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKK-LGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALN

Query:  NSIPTR
         S   R
Subjt:  NSIPTR

Arabidopsis top hitse value%identityAlignment
AT1G04625.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0729.47Show/hide
Query:  SRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSD
        S+ P  NL        W++PP+ W K N D  + S  P    G L RD  G+  GA+ +   +  +P  +EL+A++  ++  +S G+ K+  + D
Subjt:  SRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSD

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-1121.36Show/hide
Query:  CPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHS-FADRWFELHSVISSKEM----QLIARTCWAIWIDKNNVVHE-KAIPPNDIHNIWIKNY
        C RCP+  E+ +H+L KC  A+ +W ++      + ++  S +A+ ++ L+  +   ++     L+    W +W  +N ++ + K     ++    ++++
Subjt:  CPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHS-FADRWFELHSVISSKEM----QLIARTCWAIWIDKNNVVHE-KAIPPNDIHNIWIKNY

Query:  LVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGK
          E+        ++    ++    +Q W +PP  W+K N DA W+   PR GIG + R+  G +       L    +   AEL+A+   +       + +
Subjt:  LVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGK

Query:  VMVDSD
        ++ +SD
Subjt:  VMVDSD

AT3G25270.1 Ribonuclease H-like superfamily protein4.3e-1323.61Show/hide
Query:  LALNNSIPTRRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLT-FDHDLIKADFNHSFADRWFELHSVISSKEMQLIART---CWAIWIDKNNVV-HE
        LA  +++  R       C RC +E E++ H+   C  AQ +W+ +   H  ++             L S +++++ QL        W +W  +N +V  +
Subjt:  LALNNSIPTRRNLYTTMCPRCPEEWESTDHILIKCPKAQDIWKLT-FDHDLIKADFNHSFADRWFELHSVISSKEMQLIART---CWAIWIDKNNVV-HE

Query:  KAI--------PPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDF
        K+I          ND+      N  V+ L    ++SR     +        W  PP  W+K N D A+  +      G L RD  G   G+  +      
Subjt:  KAI--------PPNDIHNIWIKNYLVEYLQDNSNNSRSPACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDF

Query:  DPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQ
        D   +E +A++  ++ A+S G+ KV+ + D  Q
Subjt:  DPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQ

AT4G29090.1 Ribonuclease H-like superfamily protein3.4e-1841.67Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL
        M+ F LPK VC+ I+   A FWW + +E K +HW  W+ L   K  GG+ F+++E FN AL+ KQ+ R+++ P SL     K+ YF + D  NA L
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAEL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.2e-1738.68Show/hide
Query:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKK-LGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALN
        MS F+L K +C+ +     +FWW S + K++I W  W+KLC  K+  GGL FR++  FNQAL+AKQ  R+I  P +L +  L++ YF    M    +   
Subjt:  MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKK-LGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALN

Query:  NSIPTR
         S   R
Subjt:  NSIPTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGTTCAAGCTGCCCAAAGGTGTTTGTGAGGACATTATGAGGAAATTCGCTCAATTTTGGTGGGGCTCATCTAAGGAGAAGAAGAGGATCCACTGGTGCAAATG
GGAAAAACTGTGTTTTCCTAAAAAGCTTGGGGGTCTGAATTTCAGAGAAGTTGAGGGCTTCAATCAAGCTTTAATCGCCAAACAAGTCTTGAGGGTAATTACTAATCCAA
GATCTCTAGCGACTATGTTTCTGAAGACCATCTACTTTAAAGAAGGAGATATGAAGAATGCAGAATTAGCCCTAAACAATTCCATCCCTACCAGAAGGAATTTGTATACA
ACGATGTGCCCAAGATGTCCAGAGGAGTGGGAATCTACAGATCACATCCTTATCAAATGCCCTAAAGCTCAAGATATTTGGAAGCTTACCTTCGACCATGACTTAATAAA
AGCAGATTTTAACCACAGTTTTGCGGATAGGTGGTTTGAGCTTCATTCAGTCATTTCCTCTAAAGAGATGCAGTTGATTGCCAGGACCTGTTGGGCGATCTGGATAGACA
AGAACAATGTTGTTCATGAGAAAGCTATTCCTCCTAATGATATTCACAATATATGGATAAAGAACTACTTGGTCGAATACTTACAAGATAATTCCAACAACTCTCGGTCC
CCTGCTTGTAATTTGGATTCAATTGATCATATGCAGGGTTGGAGTTCCCCTCCAGTGAATTGGTTGAAGATCAATGTTGATGCAGCCTGGAAATCAAGGTTTCCCCGTAT
TGGAATTGGCATCCTTTGTAGAGATTCCTTTGGTTCATTGCAGGGAGCTTCAACATCGTTCTTGGATTTGGATTTTGATCCTCCGGTGGCTGAATTGAAGGCTATCTTAG
AAGGTTTGAAGTTGGCATTCTCCCTAGGCTTCGGGAAGGTGATGGTGGATTCAGATTGCCTTCAAGCAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGTTCAAGCTGCCCAAAGGTGTTTGTGAGGACATTATGAGGAAATTCGCTCAATTTTGGTGGGGCTCATCTAAGGAGAAGAAGAGGATCCACTGGTGCAAATG
GGAAAAACTGTGTTTTCCTAAAAAGCTTGGGGGTCTGAATTTCAGAGAAGTTGAGGGCTTCAATCAAGCTTTAATCGCCAAACAAGTCTTGAGGGTAATTACTAATCCAA
GATCTCTAGCGACTATGTTTCTGAAGACCATCTACTTTAAAGAAGGAGATATGAAGAATGCAGAATTAGCCCTAAACAATTCCATCCCTACCAGAAGGAATTTGTATACA
ACGATGTGCCCAAGATGTCCAGAGGAGTGGGAATCTACAGATCACATCCTTATCAAATGCCCTAAAGCTCAAGATATTTGGAAGCTTACCTTCGACCATGACTTAATAAA
AGCAGATTTTAACCACAGTTTTGCGGATAGGTGGTTTGAGCTTCATTCAGTCATTTCCTCTAAAGAGATGCAGTTGATTGCCAGGACCTGTTGGGCGATCTGGATAGACA
AGAACAATGTTGTTCATGAGAAAGCTATTCCTCCTAATGATATTCACAATATATGGATAAAGAACTACTTGGTCGAATACTTACAAGATAATTCCAACAACTCTCGGTCC
CCTGCTTGTAATTTGGATTCAATTGATCATATGCAGGGTTGGAGTTCCCCTCCAGTGAATTGGTTGAAGATCAATGTTGATGCAGCCTGGAAATCAAGGTTTCCCCGTAT
TGGAATTGGCATCCTTTGTAGAGATTCCTTTGGTTCATTGCAGGGAGCTTCAACATCGTTCTTGGATTTGGATTTTGATCCTCCGGTGGCTGAATTGAAGGCTATCTTAG
AAGGTTTGAAGTTGGCATTCTCCCTAGGCTTCGGGAAGGTGATGGTGGATTCAGATTGCCTTCAAGCAATTTAA
Protein sequenceShow/hide protein sequence
MSVFKLPKGVCEDIMRKFAQFWWGSSKEKKRIHWCKWEKLCFPKKLGGLNFREVEGFNQALIAKQVLRVITNPRSLATMFLKTIYFKEGDMKNAELALNNSIPTRRNLYT
TMCPRCPEEWESTDHILIKCPKAQDIWKLTFDHDLIKADFNHSFADRWFELHSVISSKEMQLIARTCWAIWIDKNNVVHEKAIPPNDIHNIWIKNYLVEYLQDNSNNSRS
PACNLDSIDHMQGWSSPPVNWLKINVDAAWKSRFPRIGIGILCRDSFGSLQGASTSFLDLDFDPPVAELKAILEGLKLAFSLGFGKVMVDSDCLQAI