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Lag0005845 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005845
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:31756635..31757606
RNA-Seq ExpressionLag0005845
SyntenyLag0005845
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274033.1 unnamed protein product [Prunus armeniaca]3.0e-3541.15Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------
        M+PTK PG+DG PALFYQHYW+ VGD  +  C +ILN  GS+ ++N T I LIPK+  P  V DFRPISLC V YK+V K+  NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------

Query:  ---------------------GDT-------NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVD
                             G T         GR+ GG  +   P +SHL FADDSL+F +        +KG+   Y+KASG+ IN +KSA+ FS +V 
Subjt:  ---------------------GDT-------NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVD

Query:  RDKRISLSNILGVESVENIGNYLGAP
         +   +  NIL V  V     YLG P
Subjt:  RDKRISLSNILGVESVENIGNYLGAP

KAF5470770.1 hypothetical protein F2P56_011261 [Juglans regia]1.8e-3540.09Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------
        M P   PG DGFPA FYQ +W  VG++     LK+LN+GGS++E N+T I LIPKV NPK V DFRPISLC+V YKIV+KTI NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------

Query:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF
                           + N R+            +C    P        S++HL FADDSL FC+    E+ H+  +L++YEKASG+ IN +KS++F
Subjt:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF

Query:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP
        FS++  +  +  +  + GV+S      YLG P
Subjt:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP

KAF5470771.1 hypothetical protein F2P56_011262, partial [Juglans regia]1.8e-3540.09Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------
        M P   PG DGFPA FYQ +W  VG++     LK+LN+GGS++E N+T I LIPKV NPK V DFRPISLC+V YKIV+KTI NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------

Query:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF
                           + N R+            +C    P        S++HL FADDSL FC+    E+ H+  +L++YEKASG+ IN +KS++F
Subjt:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF

Query:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP
        FS++  +  +  +  + GV+S      YLG P
Subjt:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]3.4e-3945.64Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG----------DT
        M P K PG DG  ALFY+HYW+ VGD+ +  CLK+LNEG S+E  N+T I LIPK+ +P  V DFRPISLC V YK+++KTI NR+KG            
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG----------DT

Query:  NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVDRDKRISLSNILGVESVENIGNYLGAP
          G + G       P ++HLLFADDSL+F       + HLK  L +YE A+G  +N+ KSA+ F  +VD   +  +  +LGV  V     YLG P
Subjt:  NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVDRDKRISLSNILGVESVENIGNYLGAP

XP_035539633.1 uncharacterized protein LOC108982175 [Juglans regia]1.6e-3640.52Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------
        M P   PG DGFPA FYQ +W  VG+K     LK+LN+GGS++E N+T I LIPKV NPK V DFRPISLC+V YKIV+KTI NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------

Query:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF
                           + N R+            +C    P        S++HL FADDSL+FC+    E+ H+  +L++YEKASG+ IN +KS++F
Subjt:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF

Query:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP
        FS++  +  +  +  + GV+S      YLG P
Subjt:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP

TrEMBL top hitse value%identityAlignment
A0A2N9F204 Uncharacterized protein1.3e-3638.98Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------
        M P K PG DG P LF+Q YW+ +GD+     L  LN G  ++  N T I LIPK+ NP++V DFRPISLC+V YKI++K + NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------

Query:  ---------------------GDTNNGR------------LSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFF
                                  GR            L G S S+ GP I+HL FADDSL+FCK    ++  ++G+L  YE+ASG+ IN  K+ +FF
Subjt:  ---------------------GDTNNGR------------LSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFF

Query:  SKSVDRDKRISLSNILGVESVENIGNYLGAPQSFQG
        SKS  +  + ++ N+LGV +++    YLG P SF G
Subjt:  SKSVDRDKRISLSNILGVESVENIGNYLGAPQSFQG

A0A2N9H1N4 RNase H domain-containing protein2.5e-3536.91Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNR---------------
        M P K PG DG P +FYQ YW+ +G       L  LN G  ++  N T + LIPKV NP+ V +FRPISLC+V YK+++KT+ NR               
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNR---------------

Query:  ----------------------------LKGDTNNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKS
                                    ++ +   G L G S S+ GP I+HL  ADDSL+FC+   +++N ++G+L  YEKASG+ IN +K+ +FFSKS
Subjt:  ----------------------------LKGDTNNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKS

Query:  VDRDKRISLSNILGVESVENIGNYLGAPQSFQG
             + ++ ++LGV +++    YLG P SF G
Subjt:  VDRDKRISLSNILGVESVENIGNYLGAPQSFQG

A0A6J5UD10 Uncharacterized protein1.5e-3541.15Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------
        M+PTK PG+DG PALFYQHYW+ VGD  +  C +ILN  GS+ ++N T I LIPK+  P  V DFRPISLC V YK+V K+  NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------

Query:  ---------------------GDT-------NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVD
                             G T         GR+ GG  +   P +SHL FADDSL+F +        +KG+   Y+KASG+ IN +KSA+ FS +V 
Subjt:  ---------------------GDT-------NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVD

Query:  RDKRISLSNILGVESVENIGNYLGAP
         +   +  NIL V  V     YLG P
Subjt:  RDKRISLSNILGVESVENIGNYLGAP

A0A6J5WW09 Uncharacterized protein2.5e-3541.15Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------
        M+PTK PG+DG PALFYQHYW+ VGD  +  C +ILN  GS+ ++N T I LIPK+  P  V DFRPISLC V YK+V K+  NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK-------------

Query:  ---------------------GDT-------NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVD
                             G T         GR+ GG  +   P +SHL FADDSL+F +        +KG+   Y+KASG+ IN +KSA+ FS +V 
Subjt:  ---------------------GDT-------NNGRLSGGSCSQTGPSISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVD

Query:  RDKRISLSNILGVESVENIGNYLGAP
         +   +  NIL V  V     YLG P
Subjt:  RDKRISLSNILGVESVENIGNYLGAP

A0A6P9E5W8 uncharacterized protein LOC1089821757.8e-3740.52Show/hide
Query:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------
        M P   PG DGFPA FYQ +W  VG+K     LK+LN+GGS++E N+T I LIPKV NPK V DFRPISLC+V YKIV+KTI NRLK             
Subjt:  MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKG------------

Query:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF
                           + N R+            +C    P        S++HL FADDSL+FC+    E+ H+  +L++YEKASG+ IN +KS++F
Subjt:  ------------------DTNNGRL---------SGGSCSQTGP--------SISHLLFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMF

Query:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP
        FS++  +  +  +  + GV+S      YLG P
Subjt:  FSKSVDRDKRISLSNILGVESVENIGNYLGAP

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein4.4e-0536.9Show/hide
Query:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKV-NNPKMVGDFRPISLCHVNYKIVTKTITNRLK
        K PG DGF A FYQ Y   +          I  EG     + E +I+LIPK   +     +FRPISL +++ KI+ K + NR++
Subjt:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKV-NNPKMVGDFRPISLCHVNYKIVTKTITNRLK

P08548 LINE-1 reverse transcriptase homolog2.6e-0536.9Show/hide
Query:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKV-NNPKMVGDFRPISLCHVNYKIVTKTITNRLK
        K PG DGF + FYQ +   +          I  EG     + E NI LIPK   +P    ++RPISL +++ KI+ K +TNR++
Subjt:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKV-NNPKMVGDFRPISLCHVNYKIVTKTITNRLK

P11369 LINE-1 retrotransposable element ORF2 protein4.0e-0638.1Show/hide
Query:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPK-VNNPKMVGDFRPISLCHVNYKIVTKTITNRLK
        K PG DGF A FYQ +   +    +    KI  EG     + E  I LIPK   +P  + +FRPISL +++ KI+ K + NR++
Subjt:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPK-VNNPKMVGDFRPISLCHVNYKIVTKTITNRLK

P14381 Transposon TX1 uncharacterized 149 kDa protein1.2e-0733.73Show/hide
Query:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK
        K PGLDG    F+Q +W+T+G   +    +   +G          + L+PK  + +++ ++RP+SL   +YKIV K I+ RLK
Subjt:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLK

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.3e-0940Show/hide
Query:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVT
        K PG D F A F+   W  V D T     +    G  ++ +N T I LIPKV     +  FRP+S C V YKI+T
Subjt:  KVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCCAACTAAAGTTCCGGGGCTGGATGGCTTTCCAGCCCTTTTTTATCAGCATTACTGGAACACAGTGGGGGATAAAACAAACATTAACTGTCTGAAAATTCTAAA
TGAAGGGGGTAGTATTGAGGAGTGGAATGAAACGAATATTGTCCTTATCCCTAAAGTAAATAACCCAAAAATGGTTGGAGACTTTAGGCCTATAAGCCTATGTCATGTTA
ATTACAAAATTGTTACTAAAACCATAACTAATAGGCTGAAAGGTGATACTAACAATGGAAGGCTCTCGGGTGGGAGTTGTTCACAAACAGGACCTTCTATCTCTCATTTG
TTGTTTGCAGATGATAGTTTGGTATTTTGCAAAGTTGATGAGAATGAAATCAACCACCTTAAAGGATTGCTGGAAGTTTATGAGAAAGCATCAGGGGAAAACATTAATTA
CAATAAATCAGCTATGTTTTTCTCCAAGAGTGTGGACAGGGACAAACGGATATCTCTCAGCAATATTTTAGGAGTGGAAAGTGTGGAGAACATCGGCAACTACCTGGGTG
CCCCTCAGAGTTTTCAAGGAACAAGTCCAGAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCCAACTAAAGTTCCGGGGCTGGATGGCTTTCCAGCCCTTTTTTATCAGCATTACTGGAACACAGTGGGGGATAAAACAAACATTAACTGTCTGAAAATTCTAAA
TGAAGGGGGTAGTATTGAGGAGTGGAATGAAACGAATATTGTCCTTATCCCTAAAGTAAATAACCCAAAAATGGTTGGAGACTTTAGGCCTATAAGCCTATGTCATGTTA
ATTACAAAATTGTTACTAAAACCATAACTAATAGGCTGAAAGGTGATACTAACAATGGAAGGCTCTCGGGTGGGAGTTGTTCACAAACAGGACCTTCTATCTCTCATTTG
TTGTTTGCAGATGATAGTTTGGTATTTTGCAAAGTTGATGAGAATGAAATCAACCACCTTAAAGGATTGCTGGAAGTTTATGAGAAAGCATCAGGGGAAAACATTAATTA
CAATAAATCAGCTATGTTTTTCTCCAAGAGTGTGGACAGGGACAAACGGATATCTCTCAGCAATATTTTAGGAGTGGAAAGTGTGGAGAACATCGGCAACTACCTGGGTG
CCCCTCAGAGTTTTCAAGGAACAAGTCCAGAGATTTAG
Protein sequenceShow/hide protein sequence
MFPTKVPGLDGFPALFYQHYWNTVGDKTNINCLKILNEGGSIEEWNETNIVLIPKVNNPKMVGDFRPISLCHVNYKIVTKTITNRLKGDTNNGRLSGGSCSQTGPSISHL
LFADDSLVFCKVDENEINHLKGLLEVYEKASGENINYNKSAMFFSKSVDRDKRISLSNILGVESVENIGNYLGAPQSFQGTSPEI