CuGenDBv2

Gene ID	Lag0005846
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr6:31824728..31825273
RNA-Seq Expression	Lag0005846
Synteny	Lag0005846
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.6e-49

58.33

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI++F G GDF LW+KRI+ IL+ Q AL  ++DPK LP T+    KQ++EE  Y  LILNI+DNVLRQVI+E TT+++ ++L ALY KKD P+K
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE
        +++R++LF+FKMN +K+++ENLDEFKKLT+E  Q GEKL  ESEA I INSL +TYK+VK  LKYGRE
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.0e-54

62.5

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI+KF GNGDF LW+KRI  IL  QKAL  LEDPK LP TLT  +++T+EE+AY  LI+NI+DNVLRQVI+ETT    W++L++LY KKD PNK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE
        +F++++LF+FK N  K++DENLDEFKKLT+ + QTGEKLG E+EA ILINS+ +TYK+VK  LKYGRE
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE

KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

1.8e-45

58.54

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI+KF GNGDF L +KRI  IL  QKAL  LEDPK L  TLT  +++T+EE+AY  LI+NI++NVLRQ+I+ETT    W++L++LY KKD PNK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALK
        +F+R +LF+FKMN  K++DE LDEFKKLT+ + QT EKL  ESEA ILINS+ + YK+VK  LK
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALK

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.9e-50

61.31

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI+KF GNGDF L +KRI   L  QKAL  LEDPK LP TLT  +++T+EE+AY  LI+NI+DNVLRQVI+ETT    W+ L++LY KKD  NK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE
        +F+R++LF+FKMN  K++DENLDEFKKLT+ + QT EKLG ESEA ILIN + +TYK+VK +LKYGRE
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE

XP_038902453.1 uncharacterized protein LOC120089100 [Benincasa hispida]

3.6e-51

62.35

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        MAV RYEI+KFTGNGDF LW  RI+  L  QKAL  +EDPKT P  +T E+KQ +EE+AY ALILNIS++VLRQVI E TT++VW++L+ LY+KKD PNK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGREQN
         ++R++LF+FKMNA KS+D NLD+FKKL  E  Q G  LG + E TI+I SL E+YKDVK  LKYGR  N
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGREQN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.7e-49

58.33

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI++F G GDF LW+KRI+ IL+ Q AL  ++DPK LP T+    KQ++EE  Y  LILNI+DNVLRQVI+E TT+++ ++L ALY KKD P+K
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE
        +++R++LF+FKMN +K+++ENLDEFKKLT+E  Q GEKL  ESEA I INSL +TYK+VK  LKYGRE
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-54

62.5

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI+KF GNGDF LW+KRI  IL  QKAL  LEDPK LP TLT  +++T+EE+AY  LI+NI+DNVLRQVI+ETT    W++L++LY KKD PNK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE
        +F++++LF+FK N  K++DENLDEFKKLT+ + QTGEKLG E+EA ILINS+ +TYK+VK  LKYGRE
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass

8.5e-46

58.54

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI+KF GNGDF L +KRI  IL  QKAL  LEDPK L  TLT  +++T+EE+AY  LI+NI++NVLRQ+I+ETT    W++L++LY KKD PNK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALK
        +F+R +LF+FKMN  K++DE LDEFKKLT+ + QT EKL  ESEA ILINS+ + YK+VK  LK
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALK

A0A5C7H863 Integrase catalytic domain-containing protein

4.2e-45

52.94

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Query:  RYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLR
        +++IDKF G+GDFG+W  ++K +L+QQK L  +E P+ LPE+LT EQK  + E+A   +ILN+ DNVLR+V DE    DVWK+L++L++ K   NK++L+
Subjt:  RYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLR

Query:  KRLFTFKMNAAKSMDENLDEFKKLTSEIKQTG--EKLGNESEATILINSLPETYKDVKIALKYGREQNNS
        +RLF FKMNA+K + +NLD+FKK+T E+  TG  EKL +E+EA IL+NSLP++YKDVK A+KYG++   S
Subjt:  KRLFTFKMNAAKSMDENLDEFKKLTSEIKQTG--EKLGNESEATILINSLPETYKDVKIALKYGREQNNS

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.3e-50

61.31

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Query:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK
        M   ++EI+KF GNGDF L +KRI   L  QKAL  LEDPK LP TLT  +++T+EE+AY  LI+NI+DNVLRQVI+ETT    W+ L++LY KKD  NK
Subjt:  MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNK

Query:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE
        +F+R++LF+FKMN  K++DENLDEFKKLT+ + QT EKLG ESEA ILIN + +TYK+VK +LKYGRE
Subjt:  VFLRKRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGRE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.1e-09

25.48

Show/hide

Query:  FGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLRKRLFTFKMNAAK
        + +W  RI+ +L +Q  L  ++    +P  +    K+  E  A   +I  +SD+ L     + T   + + L A+Y +K   +++ LRKRL + K+++  
Subjt:  FGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLRKRLFTFKMNAAK

Query:  SMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGREQNNSL
        S+  +   F +L SE+   G K+    + + L+ +LP  Y  +  A++   E+N +L
Subjt:  SMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGREQNNSL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.3e-23

31.9

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Query:  RYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLR
        +YE+ KF G+  F  W +R++ +L QQ     L+     P+T+  E    ++E A  A+ L++SD+V+  +IDE T   +W RL++LY+ K   NK++L+
Subjt:  RYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLR

Query:  KRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGR
        K+L+   M+   +   +L+ F  L +++   G K+  E +A +L+NSLP +Y ++   + +G+
Subjt:  KRLFTFKMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCAGTTGATAGATATGAAATTGATAAGTTCACTGGTAATGGAGATTTTGGGCTTTGGTCTAAGAGGATAAAGGTAATCTTGACTCAACAGAAAGCTTTAAACAGATT
AGAAGACCCTAAAACCTTACCTGAAACTCTTACTCCAGAGCAGAAACAAACAATTGAAGAAATAGCTTATAGAGCCCTAATCTTGAATATATCAGACAATGTGTTAAGGC
AAGTAATTGATGAAACCACAACTCATGATGTTTGGAAAAGATTACAAGCATTATATGTTAAAAAAGATTTTCCTAACAAAGTCTTTCTTAGGAAAAGATTGTTTACCTTC
AAAATGAATGCTGCAAAATCAATGGATGAGAATCTTGATGAATTCAAGAAGTTAACCTCTGAAATTAAACAAACTGGTGAGAAATTAGGAAATGAAAGTGAGGCAACTAT
TCTAATTAATTCACTTCCTGAAACCTACAAGGATGTGAAGATTGCACTAAAGTATGGAAGGGAACAGAATAACTCACTGTTTTGGAAAATATTTAAACGAATATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAVDRYEIDKFTGNGDFGLWSKRIKVILTQQKALNRLEDPKTLPETLTPEQKQTIEEIAYRALILNISDNVLRQVIDETTTHDVWKRLQALYVKKDFPNKVFLRKRLFTF
KMNAAKSMDENLDEFKKLTSEIKQTGEKLGNESEATILINSLPETYKDVKIALKYGREQNNSLFWKIFKRI

Lag0005846 (gene) of Sponge gourd (AG-4) v1 genome