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Lag0005853 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005853
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:31934779..31935123
RNA-Seq ExpressionLag0005853
SyntenyLag0005853
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33752.1 ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]6.5e-1442.11Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR C  EIQ  E+   F +A  IW Q+++P +G I+IKENP  D     SE + ++    ++MS+M+ D+ T E RM+EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMK V+ RD
Subjt:  RKVNMLMKTVQGRD

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1342.11Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR    +IQ  E+   F +AN IW Q+++P +G IVIKENP  D+    SE++ ++    ++MS+M+ D+ T E+RM EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMK V+ RD
Subjt:  RKVNMLMKTVQGRD

KAA0052315.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.5e-1442.11Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR C  EIQ  E+   F +A  IW Q+++P +G I+IKENP  D     SE + ++    ++MS+M+ D+ T E RM+EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMK V+ RD
Subjt:  RKVNMLMKTVQGRD

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-1449.57Show/hide
Query:  MSSKKSASRTS--SNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQAKKGSDADVMSIMMADIGTCEERMIEL
        M+SKK+AS +S  SN+Y GPITR     I + E+ +   +A  I  Q+ E  +  IVIKENPL+D+S  SS ++KK +  DVMS+MMADI T E  M E+
Subjt:  MSSKKSASRTS--SNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQAKKGSDADVMSIMMADIGTCEERMIEL

Query:  GRKVNMLMKTVQGRD
         RK+N LMK V+ RD
Subjt:  GRKVNMLMKTVQGRD

KAA0065378.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1342.98Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR    EIQ  E+   F +A  IW Q+++P +G IVIKENP  D+    SE++ ++    ++MS+M+ D+ T E+RM EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMKTV+ RD
Subjt:  RKVNMLMKTVQGRD

TrEMBL top hitse value%identityAlignment
A0A5A7U9H0 Ty3-gypsy retrotransposon protein9.2e-1442.11Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR    +IQ  E+   F +AN IW Q+++P +G IVIKENP  D+    SE++ ++    ++MS+M+ D+ T E+RM EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMK V+ RD
Subjt:  RKVNMLMKTVQGRD

A0A5A7UF13 Ty3-gypsy retrotransposon protein3.2e-1442.11Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR C  EIQ  E+   F +A  IW Q+++P +G I+IKENP  D     SE + ++    ++MS+M+ D+ T E RM+EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMK V+ RD
Subjt:  RKVNMLMKTVQGRD

A0A5A7VCL8 Ty3-gypsy retrotransposon protein1.2e-1342.98Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR    EIQ  E+   F +A  IW Q+++P +G IVIKENP  D+    SE++ ++    ++MS+M+ D+ T E+RM EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMKTV+ RD
Subjt:  RKVNMLMKTVQGRD

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.9e-1449.57Show/hide
Query:  MSSKKSASRTS--SNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQAKKGSDADVMSIMMADIGTCEERMIEL
        M+SKK+AS +S  SN+Y GPITR     I + E+ +   +A  I  Q+ E  +  IVIKENPL+D+S  SS ++KK +  DVMS+MMADI T E  M E+
Subjt:  MSSKKSASRTS--SNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQAKKGSDADVMSIMMADIGTCEERMIEL

Query:  GRKVNMLMKTVQGRD
         RK+N LMK V+ RD
Subjt:  GRKVNMLMKTVQGRD

E5GBB0 Ty3-gypsy retrotransposon protein3.2e-1442.11Show/hide
Query:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG
        M+S+ + S+  S+    P TR C  EIQ  E+   F +A  IW Q+++P +G I+IKENP  D     SE + ++    ++MS+M+ D+ T E RM+EL 
Subjt:  MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQA-KKGSDADVMSIMMADIGTCEERMIELG

Query:  RKVNMLMKTVQGRD
        +KVNMLMK V+ RD
Subjt:  RKVNMLMKTVQGRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCTAAGAAATCTGCTTCTAGAACTTCAAGCAACTCTTACGTGGGACCAATTACTCGCAGATGCTTTAATGAGATCCAAAAATTAGAAGAAGGAAAAGTCTTTGT
CATTGCAAATATGATATGGACCCAAATGACAGAGCCAAACCAAGGCAGGATTGTCATCAAAGAAAATCCCTTATTTGACGATTCTACTCCATCTTCTGAGCAGGCAAAGA
AGGGATCAGATGCTGACGTGATGTCTATAATGATGGCTGACATAGGTACATGCGAAGAAAGAATGATTGAACTAGGAAGGAAAGTTAACATGCTGATGAAGACGGTTCAA
GGGAGAGATTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATCTAAGAAATCTGCTTCTAGAACTTCAAGCAACTCTTACGTGGGACCAATTACTCGCAGATGCTTTAATGAGATCCAAAAATTAGAAGAAGGAAAAGTCTTTGT
CATTGCAAATATGATATGGACCCAAATGACAGAGCCAAACCAAGGCAGGATTGTCATCAAAGAAAATCCCTTATTTGACGATTCTACTCCATCTTCTGAGCAGGCAAAGA
AGGGATCAGATGCTGACGTGATGTCTATAATGATGGCTGACATAGGTACATGCGAAGAAAGAATGATTGAACTAGGAAGGAAAGTTAACATGCTGATGAAGACGGTTCAA
GGGAGAGATTTATGA
Protein sequenceShow/hide protein sequence
MSSKKSASRTSSNSYVGPITRRCFNEIQKLEEGKVFVIANMIWTQMTEPNQGRIVIKENPLFDDSTPSSEQAKKGSDADVMSIMMADIGTCEERMIELGRKVNMLMKTVQ
GRDL