; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005902 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005902
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr6:33501029..33503481
RNA-Seq ExpressionLag0005902
SyntenyLag0005902
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-1240.18Show/hide
Query:  LCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLSFTSS
        L E IW    P K+KFF+W +    INTM+ +Q R PN+CL P+ C  C K  ES +HL L  E  + +W+F    F L      L TD L +V  F S 
Subjt:  LCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLSFTSS

Query:  LWSAKHR--VFC
           + +R  VFC
Subjt:  LWSAKHR--VFC

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.7e-0334.29Show/hide
Query:  MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFYGMSAV
        + W+ I     + L  PF  +EI+  I+     K   PDG+   F K  W +L+ DIMD+F+DFY    +
Subjt:  MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFYGMSAV

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-1142.86Show/hide
Query:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL
        + +W    P+K KFF+WT+    +NTMD IQ+R PN+CL+PN C SC  S E  +HL +    A ++WN +S   G+
Subjt:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-1041.56Show/hide
Query:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL
        + +W    P+K KFF+WT+    +NTMD IQ+R P++CL+PN C SC  S E  +HL +    A + WN +S   G+
Subjt:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.7e-1034.34Show/hide
Query:  FYGMSAV--LALQKNKKVL---DEGLCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFS
        FY +++V    LQ ++ +L   ++   + +W    PKK KFF+WT+  D++NT D++ +R PNLC  P+ C  C ++ E   HL +    A+ +WN  S
Subjt:  FYGMSAV--LALQKNKKVL---DEGLCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFS

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-0340Show/hide
Query:  MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFY
        ++WS IS   +  L   F  EEI  A+    +NK+  PDG+T EF K  W +L+ DI ++F+DF+
Subjt:  MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFY

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]3.0e-1240.22Show/hide
Query:  IWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLS
        IW  +  KKVKFFLW+++  ++N  +K+QR++PN  LSP+IC  C K  E+  HL L  +FA + WN    +F L  C P+ + D + + L+
Subjt:  IWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLS

TrEMBL top hitse value%identityAlignment
A0A2N9JAE3 Uncharacterized protein1.4e-1038.79Show/hide
Query:  GLCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTD-----WLMEV
        G  + IW  + P +V FF+WT +LD I T D ++RR+    +  + C  C  SGES+SHLLL    A  +WNF   +FGLQ   P+ V D     W    
Subjt:  GLCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTD-----WLMEV

Query:  LSFTSSLWS-AKHRVF
         S    LW+   H VF
Subjt:  LSFTSSLWS-AKHRVF

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein1.9e-1240.18Show/hide
Query:  LCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLSFTSS
        L E IW    P K+KFF+W +    INTM+ +Q R PN+CL P+ C  C K  ES +HL L  E  + +W+F    F L      L TD L +V  F S 
Subjt:  LCEQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLSFTSS

Query:  LWSAKHR--VFC
           + +R  VFC
Subjt:  LWSAKHR--VFC

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein4.7e-0334.29Show/hide
Query:  MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFYGMSAV
        + W+ I     + L  PF  +EI+  I+     K   PDG+   F K  W +L+ DIMD+F+DFY    +
Subjt:  MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFYGMSAV

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein2.1e-1142.86Show/hide
Query:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL
        + +W    P+K KFF+WT+    +NTMD IQ+R PN+CL+PN C SC  S E  +HL +    A ++WN +S   G+
Subjt:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein1.4e-1041.56Show/hide
Query:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL
        + +W    P+K KFF+WT+    +NTMD IQ+R P++CL+PN C SC  S E  +HL +    A + WN +S   G+
Subjt:  EQIWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGL

A0A5D3E632 Protein FAM91A11.5e-1240.22Show/hide
Query:  IWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLS
        IW  +  KKVKFFLW+++  ++N  +K+QR++PN  LSP+IC  C K  E+  HL L  +FA + WN    +F L  C P+ + D + + L+
Subjt:  IWDEEAPKKVKFFLWTISLDNINTMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGGTCCATTATTTCACTCTTAATTAGTGTGGCTCTAGAAAAACCTTTTGATTTGGAGGAAATAGAATGGGCTATTGATCACTGTGGCAGCAACAAAGCCTTGAG
TCCCGATGGATACACCACTGAATTCCTTAAAAAGGAGTGGACCATGCTCCAACTTGACATTATGGACGTGTTTCAAGACTTTTATGGAATGTCAGCCGTTCTTGCCCTCC
AGAAAAACAAAAAGGTACTGGATGAAGGCTTATGTGAGCAAATTTGGGATGAGGAAGCTCCTAAGAAAGTAAAGTTCTTCCTATGGACCATCTCCCTTGACAACATTAAT
ACTATGGACAAAATCCAACGGAGGTATCCAAATCTATGCTTATCCCCCAATATTTGTCCTTCGTGCTGCAAAAGTGGTGAATCTGCCTCTCATTTGTTACTTCCCCATGA
GTTTGCTGAGCAAGTGTGGAATTTTTTTAGCATGATTTTTGGTCTGCAAGGCTGTAAGCCTCAGTTAGTGACGGATTGGCTGATGGAGGTCCTTTCGTTTACGAGCTCGT
TATGGAGTGCTAAACATAGGGTGTTTTGTAATCCTTCCTTTAGGAGAAGGGATGGCTTAACCCTTCGTCAGTTTGGCTCTGAGCCTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTGGTCCATTATTTCACTCTTAATTAGTGTGGCTCTAGAAAAACCTTTTGATTTGGAGGAAATAGAATGGGCTATTGATCACTGTGGCAGCAACAAAGCCTTGAG
TCCCGATGGATACACCACTGAATTCCTTAAAAAGGAGTGGACCATGCTCCAACTTGACATTATGGACGTGTTTCAAGACTTTTATGGAATGTCAGCCGTTCTTGCCCTCC
AGAAAAACAAAAAGGTACTGGATGAAGGCTTATGTGAGCAAATTTGGGATGAGGAAGCTCCTAAGAAAGTAAAGTTCTTCCTATGGACCATCTCCCTTGACAACATTAAT
ACTATGGACAAAATCCAACGGAGGTATCCAAATCTATGCTTATCCCCCAATATTTGTCCTTCGTGCTGCAAAAGTGGTGAATCTGCCTCTCATTTGTTACTTCCCCATGA
GTTTGCTGAGCAAGTGTGGAATTTTTTTAGCATGATTTTTGGTCTGCAAGGCTGTAAGCCTCAGTTAGTGACGGATTGGCTGATGGAGGTCCTTTCGTTTACGAGCTCGT
TATGGAGTGCTAAACATAGGGTGTTTTGTAATCCTTCCTTTAGGAGAAGGGATGGCTTAACCCTTCGTCAGTTTGGCTCTGAGCCTCCTTGA
Protein sequenceShow/hide protein sequence
MNWSIISLLISVALEKPFDLEEIEWAIDHCGSNKALSPDGYTTEFLKKEWTMLQLDIMDVFQDFYGMSAVLALQKNKKVLDEGLCEQIWDEEAPKKVKFFLWTISLDNIN
TMDKIQRRYPNLCLSPNICPSCCKSGESASHLLLPHEFAEQVWNFFSMIFGLQGCKPQLVTDWLMEVLSFTSSLWSAKHRVFCNPSFRRRDGLTLRQFGSEPP