CuGenDBv2

Gene ID	Lag0005908
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	ATP-dependent helicase ATRX
Genome location	chr6:33534611..33537139
RNA-Seq Expression	Lag0005908
Synteny	Lag0005908
Gene Ontology terms	GO:0000781 - chromosome, telomeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020999.1 Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma]

9.5e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

XP_022937760.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata]

9.5e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

XP_022965424.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita maxima]

9.5e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

XP_022965425.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucurbita maxima]

9.5e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

XP_023537143.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita pepo subsp. pepo]

9.5e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FC49 ATP-dependent helicase ATRX

4.6e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

A0A6J1FGU8 ATP-dependent helicase ATRX

4.6e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

A0A6J1HLN1 ATP-dependent helicase ATRX

4.6e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

A0A6J1HNN1 ATP-dependent helicase ATRX

4.6e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

A0A6J1HQY8 ATP-dependent helicase ATRX

4.6e-15

93.48

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Query:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG
        +IWNHPGILQ+TKEDKY VKREDAVENFLADESSSDENIDSNIGIG
Subjt:  KIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSNIGIG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAAATTCTTTCGGCGGCGTGTGTGATTCATGCACGACGTTTTCCAGCGATCGGTGACAACGCTTCTACTCTCCTGACGGCGGTGCTCCTTCCTAGTCTCGGCATCAT
CTTCCAATTCAATGATCTTCATCCTGAAAATCCCAGGACCAATTCCCAATACCCAGATGATCAAATTAAAACCCCAGATAAAAAACCGTCAACTAAGATTTGGAATCATC
CTGGAATCCTGCAAATGACCAAAGAAGACAAATATCATGTGAAGCGTGAAGATGCTGTTGAAAATTTTCTTGCAGATGAAAGCTCCAGCGACGAAAACATAGATTCTAAC
ATTGGCATTGGAGGTCTATTTATTTGTGGTTTGTACATTGTTGATTCGTTTGTTCGAGGAGGGGAGTTGAGGACTTGGATCATTTGCTCTTGA

mRNA sequence

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Protein sequence

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MQILSAACVIHARRFPAIGDNASTLLTAVLLPSLGIIFQFNDLHPENPRTNSQYPDDQIKTPDKKPSTKIWNHPGILQMTKEDKYHVKREDAVENFLADESSSDENIDSN
IGIGGLFICGLYIVDSFVRGGELRTWIICS

Lag0005908 (gene) of Sponge gourd (AG-4) v1 genome