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Lag0005928 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005928
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:33843922..33845313
RNA-Seq ExpressionLag0005928
SyntenyLag0005928
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]4.5e-0543.18Show/hide
Query:  MFGVHLHSTFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLF----DEDLIKTMIKIRLLKYKSSLSQEPKLHDAPSP
        M  ++LH  FSF K K  T +K++ STS FDRLK+  DQ QR+M +LKVK F    D+D I + +  R+   K  LS +     A SP
Subjt:  MFGVHLHSTFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLF----DEDLIKTMIKIRLLKYKSSLSQEPKLHDAPSP

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.5e-0544.57Show/hide
Query:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDEDLIKTMIKIRL---LKYKSSLS---QEPKLHDAPSPHELKRFSRAS
        T +F +    T +K + ST VFDRLK+ +DQ QR+M  LK K F E+     I  R+   +K K S+    +EPKLH APSP ELK  + AS
Subjt:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDEDLIKTMIKIRL---LKYKSSLS---QEPKLHDAPSPHELKRFSRAS

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]1.3e-0440.62Show/hide
Query:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDE----DLIKTMIKIRLLKYKSSL---SQEPKLHDAPSPHELKRFSRASMSL
        T +F +    T +K + STS FDR K+ ++Q QR++ +LK KLF E    D I + +  R +K K S+   +++PKLH APSP ELK F   + S+
Subjt:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDE----DLIKTMIKIRLLKYKSSL---SQEPKLHDAPSPHELKRFSRASMSL

TYK26726.1 hypothetical protein E5676_scaffold124G00100 [Cucumis melo var. makuwa]5.0e-0436.62Show/hide
Query:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKL-FDEDLIKTMIKIRL---LKYKSSL---SQEPKLHDAPSPHELKRFSRASMSLISKF
        T +F +    TL+K + STS FD LK+  D+ +R+M  LK KL ++E+     I  R+   +K K S    ++EPKLH APSP ELK  ++ S  LI   
Subjt:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKL-FDEDLIKTMIKIRL---LKYKSSL---SQEPKLHDAPSPHELKRFSRASMSLISKF

Query:  EERSSFYQSLKKAHSLKVWRFPLRCSSLSPS--SKVLPHVAA
          +    Q L    S+  +   +  SS S S  S  LPH+ A
Subjt:  EERSSFYQSLKKAHSLKVWRFPLRCSSLSPS--SKVLPHVAA

TrEMBL top hitse value%identityAlignment
A0A5A7UC34 Uncharacterized protein2.2e-0543.18Show/hide
Query:  MFGVHLHSTFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLF----DEDLIKTMIKIRLLKYKSSLSQEPKLHDAPSP
        M  ++LH  FSF K K  T +K++ STS FDRLK+  DQ QR+M +LKVK F    D+D I + +  R+   K  LS +     A SP
Subjt:  MFGVHLHSTFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLF----DEDLIKTMIKIRLLKYKSSLSQEPKLHDAPSP

A0A5A7UM99 Ty3-gypsy retrotransposon protein2.2e-0544.57Show/hide
Query:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDEDLIKTMIKIRL---LKYKSSLS---QEPKLHDAPSPHELKRFSRAS
        T +F +    T +K + ST VFDRLK+ +DQ QR+M  LK K F E+     I  R+   +K K S+    +EPKLH APSP ELK  + AS
Subjt:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDEDLIKTMIKIRL---LKYKSSLS---QEPKLHDAPSPHELKRFSRAS

A0A5A7VHY3 Uncharacterized protein6.4e-0540.62Show/hide
Query:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDE----DLIKTMIKIRLLKYKSSL---SQEPKLHDAPSPHELKRFSRASMSL
        T +F +    T +K + STS FDR K+ ++Q QR++ +LK KLF E    D I + +  R +K K S+   +++PKLH APSP ELK F   + S+
Subjt:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDE----DLIKTMIKIRLLKYKSSL---SQEPKLHDAPSPHELKRFSRASMSL

A0A5D3DSN6 Uncharacterized protein2.4e-0436.62Show/hide
Query:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKL-FDEDLIKTMIKIRL---LKYKSSL---SQEPKLHDAPSPHELKRFSRASMSLISKF
        T +F +    TL+K + STS FD LK+  D+ +R+M  LK KL ++E+     I  R+   +K K S    ++EPKLH APSP ELK  ++ S  LI   
Subjt:  TFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKL-FDEDLIKTMIKIRL---LKYKSSL---SQEPKLHDAPSPHELKRFSRASMSLISKF

Query:  EERSSFYQSLKKAHSLKVWRFPLRCSSLSPS--SKVLPHVAA
          +    Q L    S+  +   +  SS S S  S  LPH+ A
Subjt:  EERSSFYQSLKKAHSLKVWRFPLRCSSLSPS--SKVLPHVAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGCGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCACATTGAGGAAAAGTCAGTCTTCAACATCCGTCTTTGATCGCCTCAAAGTAGCAGA
CGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGATCTGATCAAGACCATGATAAAGATAAGGCTTTTAAAATATAAAAGCTCCTTATCGC
AAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTTCTCTCGTGCTTCGATGTCTCTTATCTCCAAGTTTGAAGAACGCAGTTCCTTCTATCAAAGT
TTGAAGAAGGCTCATTCTCTCAAAGTTTGGAGGTTCCCGCTTCGCTGCAGTTCCTTGTCTCCAAGTTCGAAGGTTCTCCCACACGTCGCTGCAGTCCCTCTCTCAAATTT
CGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGATCTCCAAGTTTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGTTGCTCCGCCGCAGTTCC
TTCTTCCAAGTTCGAAGGTTCGCCACTATGGTTCTCCTTCTCCAAGTGCGAAGGTTCACCGTTACTCCTTTTCAAATGTTTGGCGGTGGTTGACGGCCTCGCCTCGCTTC
ATCTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCACTTCATCTTCAAAGGTTGGCGGTTGGCGGCTTCGACCTCGCTTCATCTTCAAAGGTTGGCAGCATCGCTTCATC
TTCAAAGGTTCTCAGCCTCGCTTCATCTTCAAATGTTGGTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGCGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCACATTGAGGAAAAGTCAGTCTTCAACATCCGTCTTTGATCGCCTCAAAGTAGCAGA
CGATCAACCTCAAAGAAAGATGGATAACTTAAAGGTGAAATTGTTCGATGAAGATCTGATCAAGACCATGATAAAGATAAGGCTTTTAAAATATAAAAGCTCCTTATCGC
AAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTTCTCTCGTGCTTCGATGTCTCTTATCTCCAAGTTTGAAGAACGCAGTTCCTTCTATCAAAGT
TTGAAGAAGGCTCATTCTCTCAAAGTTTGGAGGTTCCCGCTTCGCTGCAGTTCCTTGTCTCCAAGTTCGAAGGTTCTCCCACACGTCGCTGCAGTCCCTCTCTCAAATTT
CGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGATCTCCAAGTTTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGTTGCTCCGCCGCAGTTCC
TTCTTCCAAGTTCGAAGGTTCGCCACTATGGTTCTCCTTCTCCAAGTGCGAAGGTTCACCGTTACTCCTTTTCAAATGTTTGGCGGTGGTTGACGGCCTCGCCTCGCTTC
ATCTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCACTTCATCTTCAAAGGTTGGCGGTTGGCGGCTTCGACCTCGCTTCATCTTCAAAGGTTGGCAGCATCGCTTCATC
TTCAAAGGTTCTCAGCCTCGCTTCATCTTCAAATGTTGGTAGTTGA
Protein sequenceShow/hide protein sequence
MFGVHLHSTFSFPKAKCLTLRKSQSSTSVFDRLKVADDQPQRKMDNLKVKLFDEDLIKTMIKIRLLKYKSSLSQEPKLHDAPSPHELKRFSRASMSLISKFEERSSFYQS
LKKAHSLKVWRFPLRCSSLSPSSKVLPHVAAVPLSNFEGSHVASLQFLPPSSKDLQVFLLPKFEGSHVAPPQFLLPSSKVRHYGSPSPSAKVHRYSFSNVWRWLTASPRF
IFKCWQLTASASLHLQRLAVGGFDLASSSKVGSIASSSKVLSLASSSNVGS