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Lag0005932 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005932
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like domain containing protein
Genome locationchr6:33980008..33982968
RNA-Seq ExpressionLag0005932
SyntenyLag0005932
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON70489.1 Ribonuclease H-like domain containing protein [Trema orientale]7.3e-0439.02Show/hide
Query:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
        +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+ +GV++F + PRS N   H++A
Subjt:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
PON88309.1 Ribonuclease H-like domain containing protein [Trema orientale]7.3e-0439.02Show/hide
Query:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
        +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+ +GV++F + PRS N   H++A
Subjt:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
TrEMBL top hitse value%identityAlignment
A0A2P5DB32 Ribonuclease H-like domain containing protein3.5e-0439.02Show/hide
Query:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
        +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+ +GV++F + PRS N   H++A
Subjt:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
A0A2P5ERX8 Ribonuclease H-like domain containing protein3.5e-0439.02Show/hide
Query:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
        +V EA+AL+EGL  +  +L      V+ESDC +L+S L  + +    +  +VEEIL++A+ +GV++F + PRS N   H++A
Subjt:  NVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTGAAATCGGTGAAAGAGAAAGGACCAATCAATGTGCTCGAGGCGATGGCGTTGAGGGAAGGATTAAAATTATTATGTGATATACTTGGAAATCCGTCGACGAT
CGTTGTGGAATCTGATTGTATTGACCTCGTTAGCTGCTTGATCAATACTGAAGAGGATTTAACGAAATTGAAGGTTGTAGTCGAAGAGATTCTCGTATTGGCTCAAAATC
TAGGAGTACTCCAATTCAAGCATGGTCCTAGATCTCAAAATGACGCGACTCATTCCATTGCCCATGGGTCTCCTTCCACACTGGAAGGTGTTAGAGATCTTGTCAGGATG
CTCGTTGGGGTATGTAACATGATGTACCATGATTGTTGCCTTGTCGTATATGCTAAAAGTGTGGATACTAGTATCCATAGGGATGGTGCAAGTCTGAATTCAATGGAAAA
CACAAACAAACAGATGAAGGATTTCATACATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTA
CCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAATCCCTCTCGTGCCATGAAGAG
GGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTGAAATCGGTGAAAGAGAAAGGACCAATCAATGTGCTCGAGGCGATGGCGTTGAGGGAAGGATTAAAATTATTATGTGATATACTTGGAAATCCGTCGACGAT
CGTTGTGGAATCTGATTGTATTGACCTCGTTAGCTGCTTGATCAATACTGAAGAGGATTTAACGAAATTGAAGGTTGTAGTCGAAGAGATTCTCGTATTGGCTCAAAATC
TAGGAGTACTCCAATTCAAGCATGGTCCTAGATCTCAAAATGACGCGACTCATTCCATTGCCCATGGGTCTCCTTCCACACTGGAAGGTGTTAGAGATCTTGTCAGGATG
CTCGTTGGGGTATGTAACATGATGTACCATGATTGTTGCCTTGTCGTATATGCTAAAAGTGTGGATACTAGTATCCATAGGGATGGTGCAAGTCTGAATTCAATGGAAAA
CACAAACAAACAGATGAAGGATTTCATACATATTTCTGTGTCCACGGATATTGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTA
CCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAATCCCTCTCGTGCCATGAAGAG
GGTAGGGCCCATTGTTCAAGACCCGGAGACACCACTTAA
Protein sequenceShow/hide protein sequence
MGLKSVKEKGPINVLEAMALREGLKLLCDILGNPSTIVVESDCIDLVSCLINTEEDLTKLKVVVEEILVLAQNLGVLQFKHGPRSQNDATHSIAHGSPSTLEGVRDLVRM
LVGVCNMMYHDCCLVVYAKSVDTSIHRDGASLNSMENTNKQMKDFIHISVSTDIDRQQQVSPSRVFVPQLGQITVLPLGYLLVLKYQCSSNEQPVCGPTNKQKSLSCHEE
GRAHCSRPGDTT