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Lag0005938 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005938
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:34073970..34074836
RNA-Seq ExpressionLag0005938
SyntenyLag0005938
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144467.1 uncharacterized protein LOC111014147 [Momordica charantia]2.3e-5048.67Show/hide
Query:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREA----QQEPTGKVCTHSILM-
        +FH  HGH T++C  L++E+E LIR GYLKE+V     + P     G+   +P  EIRTI+GGP   ESGRKRKA VREA    +Q     V  H +L+ 
Subjt:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREA----QQEPTGKVCTHSILM-

Query:  -------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTE
                     K    G + LK S  PLVGFGGE+V P G +E PVTFG G ++VT+M++ LVV+   +YNAILGRPT+H L+A+ STYHQ +KFPT 
Subjt:  -------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTE

Query:  EGVGAVYGEQRMSRECYFMALRNIDK
         GVG + GEQR+SRECY+ ++R+ D+
Subjt:  EGVGAVYGEQRMSRECYFMALRNIDK

XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]8.9e-4240.07Show/hide
Query:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQQEP----------TGK---
        +FH DHGH T++C  L++E+E LIR GYLKE+V  +  K  L ++      +P  EI+TI GGP+  E G+KRKA+++EA+  P          TG+   
Subjt:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQQEP----------TGK---

Query:  ---------------------------VCTHSILM--------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFL
                                      H IL+              K    G + LK +L PLVGFGGE+V  +  ++LPVTFG G + +T+++ FL
Subjt:  ---------------------------VCTHSILM--------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFL

Query:  VVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQAT
        VVD   +YNAILGRPT+H LKA+ STYH+ LKFPT+ G+  V GEQR+S ECY+ +LR  D   +A+
Subjt:  VVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQAT

XP_023902012.1 uncharacterized protein LOC112013864 [Quercus suber]7.1e-3939.39Show/hide
Query:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQ--------------------
        FH DHGH T EC  L+ +IE LIR+G LK F+G D     L A   +    P  EIR ILGG S G+S + +KA ++  Q                    
Subjt:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQ--------------------

Query:  ---------QEPTGKVCTHSILMKTHQT------------------------GGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVV
                   P       ++L+  ++T                        G + L+P+ +PLVGFGG KV P GS+ LPVT G   Q VT  ++FLVV
Subjt:  ---------QEPTGKVCTHSILMKTHQT------------------------GGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVV

Query:  DCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQA
        DC  +YNAI+GRPTL+  KAV STYH  +KFPTE GVG V G+Q  +RECY +A+   D+++QA
Subjt:  DCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQA

XP_023903529.1 uncharacterized protein LOC112015361 [Quercus suber]2.1e-3840.08Show/hide
Query:  DHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPL-EIRTILGGPSGGESGRKRKAAVREAQ----------------------
        DHGH T EC  L+ +IE LIR+G LK F+G DR    L A + +    PPL EIR ILGG S G+S + +KA ++  Q                      
Subjt:  DHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPL-EIRTILGGPSGGESGRKRKAAVREAQ----------------------

Query:  -------QEPTGKVCTHSILMKTHQT------------------------GGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDC
                 P       ++L+  ++T                        G + L+P+ +PLVGFGG KV P GSV LPVT G   Q VT+ +NFLVVDC
Subjt:  -------QEPTGKVCTHSILMKTHQT------------------------GGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDC

Query:  VPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQA
          +YNAI+GRPTL+  KA+ STYH  +KFPTE G G V+G+Q  +RECY +A+   D+++QA
Subjt:  VPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQA

XP_023923582.1 uncharacterized protein LOC112034990 [Quercus suber]1.4e-3941.74Show/hide
Query:  DHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQ------QEPTGKVCTHSILMKTH
        DHGH T EC  L+ +IE LIR+G L+ FVG D     L A   +    P  EIR I+GG S G+S + +K  ++  Q      + P  K      +  T 
Subjt:  DHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQ------QEPTGKVCTHSILMKTH

Query:  Q----------------TGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTE
        +                 G + L+P+ +PL+GFGG KV P G++ LPV  G   Q + + +NFLVVDC  +YNAI+GRPTL+  KAV STYH  +KFPTE
Subjt:  Q----------------TGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTE

Query:  EGVGAVYGEQRMSRECYFMALRNIDKKLQA
         GVG   G+Q ++RECY +A+  +D+K+QA
Subjt:  EGVGAVYGEQRMSRECYFMALRNIDKKLQA

TrEMBL top hitse value%identityAlignment
A0A2N9G201 Integrase catalytic domain-containing protein9.0e-4046.98Show/hide
Query:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPL--PADQGKGGAN---PPLEIRTILGGP-SGGESGRKRKAAVREAQQEPTGKVCTHS---
        FH DHGH T EC+ L+++IETLIR+G L+++V    N RP   PA + +   N   P  EIRTI+GGP SGG S   RKA  R +       V   S   
Subjt:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPL--PADQGKGGAN---PPLEIRTILGGP-SGGESGRKRKAAVREAQQEPTGKVCTHS---

Query:  -ILMKTHQ---TGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAV
         + +  +Q      + L+P   PLVGF G+KV P G V LP+T G   +TV++ ++FLVV+C   YNAI+GRPTL+ L+AV STYH +LKFPTE G+G V
Subjt:  -ILMKTHQ---TGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAV

Query:  YGEQRMSRECYFMAL
         G+Q  +RECY  +L
Subjt:  YGEQRMSRECYFMAL

A0A2N9GNB7 Ribonuclease H7.6e-3942.31Show/hide
Query:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPL--PADQGKGGAN---PPLEIRTILGGP-SGGESGRKRKAAVREAQ-----QEPTGKV--
        FH DHGH T +C+ L++++ETLIR+G L+++V    N RP   PA + +   N   P  EIRTI+GGP SGG S   RKA  R+       Q P   +  
Subjt:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPL--PADQGKGGAN---PPLEIRTILGGP-SGGESGRKRKAAVREAQ-----QEPTGKV--

Query:  -----CTHSILMKTHQTGG--------------EHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAV
              T  +++    +                + L+P   PLVGF G+KV P G V LP+T G   +TV++ ++FLVV+C   YNAI+GRPTL+ L+AV
Subjt:  -----CTHSILMKTHQTGG--------------EHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAV

Query:  ASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMAL
         STYH +LKFPTE G+G V G+Q  +RECY  +L
Subjt:  ASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMAL

A0A6J1CTS4 uncharacterized protein LOC1110141471.1e-5048.67Show/hide
Query:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREA----QQEPTGKVCTHSILM-
        +FH  HGH T++C  L++E+E LIR GYLKE+V     + P     G+   +P  EIRTI+GGP   ESGRKRKA VREA    +Q     V  H +L+ 
Subjt:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREA----QQEPTGKVCTHSILM-

Query:  -------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTE
                     K    G + LK S  PLVGFGGE+V P G +E PVTFG G ++VT+M++ LVV+   +YNAILGRPT+H L+A+ STYHQ +KFPT 
Subjt:  -------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTE

Query:  EGVGAVYGEQRMSRECYFMALRNIDK
         GVG + GEQR+SRECY+ ++R+ D+
Subjt:  EGVGAVYGEQRMSRECYFMALRNIDK

A0A6J1DET8 uncharacterized protein LOC1110198381.7e-3838.38Show/hide
Query:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANP------PLEIRTILGGPSGGESGRKRKAAVREA--------QQEPT--
        FH DHGH T  C +L+ +IE LI++GY K+FVG  R+      ++ K    P      P  I TI GGPSGG+S  KR    R A        +Q PT  
Subjt:  FHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANP------PLEIRTILGGPSGGESGRKRKAAVREA--------QQEPT--

Query:  ---------------------GKVCTHSILMKTHQTGG------------------EHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFL
                               +  H ++ +    GG                    LK SLTPLVGF GE ++P G ++LPVTFG+    VT+M  F+
Subjt:  ---------------------GKVCTHSILMKTHQTGG------------------EHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFL

Query:  VVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQATPASG
        V+D    YNAI GRP +H  +AV ST HQVLK+ T  GVG V GEQ  SRECY  AL+          ASG
Subjt:  VVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQATPASG

A0A6J1DV51 uncharacterized protein LOC1110246624.3e-4240.07Show/hide
Query:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQQEP----------TGK---
        +FH DHGH T++C  L++E+E LIR GYLKE+V  +  K  L ++      +P  EI+TI GGP+  E G+KRKA+++EA+  P          TG+   
Subjt:  MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQQEP----------TGK---

Query:  ---------------------------VCTHSILM--------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFL
                                      H IL+              K    G + LK +L PLVGFGGE+V  +  ++LPVTFG G + +T+++ FL
Subjt:  ---------------------------VCTHSILM--------------KTHQTGGEHLKPSLTPLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFL

Query:  VVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQAT
        VVD   +YNAILGRPT+H LKA+ STYH+ LKFPT+ G+  V GEQR+S ECY+ +LR  D   +A+
Subjt:  VVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCACGGGGATCACGGCCATACAACTCGAGAATGCATCCAGTTGCGGGATGAGATAGAAACCCTGATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGGGCGATAG
AAACAAGAGGCCGCTACCAGCGGACCAAGGCAAAGGAGGAGCCAACCCGCCGCTTGAGATTCGAACCATTTTAGGGGGACCCTCAGGAGGGGAGTCGGGGAGGAAACGGA
AGGCTGCTGTTCGAGAGGCGCAGCAAGAGCCGACGGGCAAGGTATGTACTCACTCCATCTTGATGAAAACTCACCAAACTGGGGGTGAACACCTGAAACCGAGCCTTACG
CCACTGGTAGGTTTCGGCGGAGAAAAGGTAAGCCCGAGAGGAAGCGTCGAATTACCGGTGACGTTTGGAGAGGGGTTGCAGACAGTAACGAGGATGATCAATTTCCTGGT
GGTTGATTGCGTCCCAACGTATAATGCCATCTTGGGACGACCCACTCTGCATGGGCTCAAGGCTGTGGCTTCAACCTACCACCAAGTCCTGAAATTCCCAACGGAAGAAG
GTGTAGGAGCAGTATATGGCGAGCAAAGAATGTCAAGGGAATGCTACTTCATGGCACTCAGGAACATCGACAAAAAGCTTCAAGCGACACCAGCCTCGGGATATGTCCGA
GGCCGAGCAGTTGAGGGGACAAGTCTTCCCCTCCCAATGGAGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTCACGGGGATCACGGCCATACAACTCGAGAATGCATCCAGTTGCGGGATGAGATAGAAACCCTGATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGGGCGATAG
AAACAAGAGGCCGCTACCAGCGGACCAAGGCAAAGGAGGAGCCAACCCGCCGCTTGAGATTCGAACCATTTTAGGGGGACCCTCAGGAGGGGAGTCGGGGAGGAAACGGA
AGGCTGCTGTTCGAGAGGCGCAGCAAGAGCCGACGGGCAAGGTATGTACTCACTCCATCTTGATGAAAACTCACCAAACTGGGGGTGAACACCTGAAACCGAGCCTTACG
CCACTGGTAGGTTTCGGCGGAGAAAAGGTAAGCCCGAGAGGAAGCGTCGAATTACCGGTGACGTTTGGAGAGGGGTTGCAGACAGTAACGAGGATGATCAATTTCCTGGT
GGTTGATTGCGTCCCAACGTATAATGCCATCTTGGGACGACCCACTCTGCATGGGCTCAAGGCTGTGGCTTCAACCTACCACCAAGTCCTGAAATTCCCAACGGAAGAAG
GTGTAGGAGCAGTATATGGCGAGCAAAGAATGTCAAGGGAATGCTACTTCATGGCACTCAGGAACATCGACAAAAAGCTTCAAGCGACACCAGCCTCGGGATATGTCCGA
GGCCGAGCAGTTGAGGGGACAAGTCTTCCCCTCCCAATGGAGTATTAG
Protein sequenceShow/hide protein sequence
MFHGDHGHTTRECIQLRDEIETLIREGYLKEFVGGDRNKRPLPADQGKGGANPPLEIRTILGGPSGGESGRKRKAAVREAQQEPTGKVCTHSILMKTHQTGGEHLKPSLT
PLVGFGGEKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPTYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQRMSRECYFMALRNIDKKLQATPASGYVR
GRAVEGTSLPLPMEY