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Lag0005945 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005945
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr6:34154473..34155715
RNA-Seq ExpressionLag0005945
SyntenyLag0005945
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054564.1 uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa]7.6e-2460Show/hide
Query:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKI
        M + L+GKNK GFI  +IKK  EG   + WKCN+ +IASWI+NS+SKEIA S+VY GS K VWDEL   ++Q+NGP IYQLR++LVT++QG+L I
Subjt:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKI

KAA0065480.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]4.8e-2640.28Show/hide
Query:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL-------
        MLMA++G+NK GFI G I+K  +G     W CNN I+ASWILNSVSKEIA SI+Y GS K +WDEL   FKQ+NGP IYQLRKE VT  QG L       
Subjt:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL-------

Query:  ---------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGK
                                                           +IL+M P+ +IN  FSL IQEE QRS    + +    I  VA  + +  
Subjt:  ---------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGK

Query:  KNTPDRSRKKE
          + DR+RKKE
Subjt:  KNTPDRSRKKE

XP_022145891.1 uncharacterized protein LOC111015239 [Momordica charantia]3.5e-2939.62Show/hide
Query:  MLMALAGKNKEGFIYGTIKKLEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL--------
        ML+AL+GKNK GFI GTIKK  G     WKCNN II SWI+NSVSKEIA SI+YTGS K +WDEL   F+Q++ PRI+QLRKELVT+ QG L        
Subjt:  MLMALAGKNKEGFIYGTIKKLEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL--------

Query:  --------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGKK
                                                          +IL+M+PI  +NK FSL IQEE QR+  T   ++    ++  A+ +  K+
Subjt:  --------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGKK

Query:  NTPDRSRKKEGQ
        N+  + R+K+ +
Subjt:  NTPDRSRKKEGQ

XP_038888312.1 uncharacterized protein LOC120078158 [Benincasa hispida]3.4e-2459.79Show/hide
Query:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKILV
        M + L+GKNK GFI GTI+K LEG+  + W+CNN +I SWI+NSVSKEIA S+VY GS K +WDEL   + Q+NGP IYQLRK+L T++QG L + V
Subjt:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKILV

XP_042969209.1 uncharacterized protein LOC122301926 [Carya illinoinensis]2.1e-2143.51Show/hide
Query:  MLMALAGKNKEGFIYGTIKKLEGTQSTT--WKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKILVMN
        M+MAL  KNK GF+ G+I +   T +++  W+  N++++SWI++SVS+EI  SI+   + K +W E+ N F Q NGPRI+QL+K+L   +Q  + IL++ 
Subjt:  MLMALAGKNKEGFIYGTIKKLEGTQSTT--WKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKILVMN

Query:  PILAINKAFSLFIQEEHQRSTATASALSIEA
        P+  INK FSL +QEE QR  +  SA+   A
Subjt:  PILAINKAFSLFIQEEHQRSTATASALSIEA

TrEMBL top hitse value%identityAlignment
A0A2N9ISU2 Retrotran_gag_3 domain-containing protein5.9e-2241.14Show/hide
Query:  MLMALAGKNKEGFIYGTIKKLEGTQST--TWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALK--ILV
        ML+AL  KNKEGF+ G+I+ L  + ++  +WK  + ++ SWILNS+SKEI+ S++Y  ++  VW +L   F Q++GPR+YQL+K + + +Q  ++  IL+
Subjt:  MLMALAGKNKEGFIYGTIKKLEGTQST--TWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALK--ILV

Query:  MNPILAINKAFSLFIQEEHQR-----STATASALSIEAITLVAAIVDNGKKNTPDRSR
        M+P+  INK FSL  QEE QR     STA     S  A+ +     +NG KN   + R
Subjt:  MNPILAINKAFSLFIQEEHQR-----STATASALSIEAITLVAAIVDNGKKNTPDRSR

A0A5A7VE66 Cysteine-rich RLK (Receptor-like protein kinase) 82.3e-2640.28Show/hide
Query:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL-------
        MLMA++G+NK GFI G I+K  +G     W CNN I+ASWILNSVSKEIA SI+Y GS K +WDEL   FKQ+NGP IYQLRKE VT  QG L       
Subjt:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL-------

Query:  ---------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGK
                                                           +IL+M P+ +IN  FSL IQEE QRS    + +    I  VA  + +  
Subjt:  ---------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGK

Query:  KNTPDRSRKKE
          + DR+RKKE
Subjt:  KNTPDRSRKKE

A0A5D3D9Z1 Retrotrans_gag domain-containing protein3.7e-2460Show/hide
Query:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKI
        M + L+GKNK GFI  +IKK  EG   + WKCN+ +IASWI+NS+SKEIA S+VY GS K VWDEL   ++Q+NGP IYQLR++LVT++QG+L I
Subjt:  MLMALAGKNKEGFIYGTIKK-LEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKI

A0A5J4ZL66 Uncharacterized protein8.5e-2142.45Show/hide
Query:  MLMALAGKNKEGFIYGTIKKLEGTQST-----TWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKIL
        M MAL+ KNK GFI G+I +   +Q T      W   N+++ SWILNSVSK++A SI++  +  AVW +L   F Q+N PRI+QL++ + + SQ    +L
Subjt:  MLMALAGKNKEGFIYGTIKKLEGTQST-----TWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKIL

Query:  VMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVA
        +M+P+  INK FSL +QEE QR  A+ +  ++E   L++
Subjt:  VMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVA

A0A6J1CXR2 uncharacterized protein LOC1110152391.7e-2939.62Show/hide
Query:  MLMALAGKNKEGFIYGTIKKLEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL--------
        ML+AL+GKNK GFI GTIKK  G     WKCNN II SWI+NSVSKEIA SI+YTGS K +WDEL   F+Q++ PRI+QLRKELVT+ QG L        
Subjt:  MLMALAGKNKEGFIYGTIKKLEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGAL--------

Query:  --------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGKK
                                                          +IL+M+PI  +NK FSL IQEE QR+  T   ++    ++  A+ +  K+
Subjt:  --------------------------------------------------KILVMNPILAINKAFSLFIQEEHQRSTATASALSIEAITLVAAIVDNGKK

Query:  NTPDRSRKKEGQ
        N+  + R+K+ +
Subjt:  NTPDRSRKKEGQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4.0e-0731.33Show/hide
Query:  KEGFIYGTIKKLE--GTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQG
        K GFI GT+ K +        W+  N ++  W++NS++ ++  S++Y  +   +W++L   F      +IYQLR+ L T  QG
Subjt:  KEGFIYGTIKKLE--GTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGGCATTGGCTGGTAAAAATAAGGAGGGTTTCATATATGGAACCATCAAGAAACTAGAAGGCACACAATCGACAACCTGGAAATGCAACAATCACATAATAGC
CTCTTGGATTCTCAACTCAGTATCCAAAGAAATCGCAAGAAGTATCGTTTACACTGGTTCAACAAAGGCAGTTTGGGATGAATTGGGAAATCCATTCAAGCAAACCAACG
GACCTCGAATCTATCAGCTGAGGAAAGAATTGGTTACTTCAAGTCAAGGAGCCCTAAAAATTCTTGTCATGAATCCGATACTTGCAATCAATAAAGCGTTTTCTTTATTT
ATACAAGAAGAACACCAAAGATCAACTGCCACTGCTTCTGCACTATCAATTGAGGCTATTACTTTAGTTGCTGCAATTGTCGATAATGGAAAGAAGAATACCCCCGATCG
TTCTCGAAAGAAAGAAGGACAGATTACGATCGAAGATGATTGGCAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGGCATTGGCTGGTAAAAATAAGGAGGGTTTCATATATGGAACCATCAAGAAACTAGAAGGCACACAATCGACAACCTGGAAATGCAACAATCACATAATAGC
CTCTTGGATTCTCAACTCAGTATCCAAAGAAATCGCAAGAAGTATCGTTTACACTGGTTCAACAAAGGCAGTTTGGGATGAATTGGGAAATCCATTCAAGCAAACCAACG
GACCTCGAATCTATCAGCTGAGGAAAGAATTGGTTACTTCAAGTCAAGGAGCCCTAAAAATTCTTGTCATGAATCCGATACTTGCAATCAATAAAGCGTTTTCTTTATTT
ATACAAGAAGAACACCAAAGATCAACTGCCACTGCTTCTGCACTATCAATTGAGGCTATTACTTTAGTTGCTGCAATTGTCGATAATGGAAAGAAGAATACCCCCGATCG
TTCTCGAAAGAAAGAAGGACAGATTACGATCGAAGATGATTGGCAAGGCTAA
Protein sequenceShow/hide protein sequence
MLMALAGKNKEGFIYGTIKKLEGTQSTTWKCNNHIIASWILNSVSKEIARSIVYTGSTKAVWDELGNPFKQTNGPRIYQLRKELVTSSQGALKILVMNPILAINKAFSLF
IQEEHQRSTATASALSIEAITLVAAIVDNGKKNTPDRSRKKEGQITIEDDWQG