; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005954 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005954
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:34501628..34504860
RNA-Seq ExpressionLag0005954
SyntenyLag0005954
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8501205.1 hypothetical protein CXB51_003327 [Gossypium anomalum]5.2e-0421.89Show/hide
Query:  DYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYRFYICPLLPQMVVHVDELCNDNSRM
        +Y   +     +L D P +     C   WA+W DRN  +H K+  + ++   ++  Y+++        S        +  P    + ++ D    + +R 
Subjt:  DYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYRFYICPLLPQMVVHVDELCNDNSRM

Query:  YRVGVVVHNSGGSLGEVEVDLEVQATVWDIRDLGSHFNNVEFMHSPRDHNWIAHKLAHHEEVEPAKRRE
           G+VV NS G +     ++  +       +L S  + V    +PR  N +AH LA     E  +R+E
Subjt:  YRVGVVVHNSGGSLGEVEVDLEVQATVWDIRDLGSHFNNVEFMHSPRDHNWIAHKLAHHEEVEPAKRRE

TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]8.1e-0526.36Show/hide
Query:  KLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYR-FYICPLLP
        ++WR L G  VIQ +  +      LSL           + +G W LW +RN+V+HG +     D   WI  +  +F  AN  N      ++  +  P   
Subjt:  KLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYR-FYICPLLP

Query:  QMVVHVDELCNDNSRMYRVGVVVHNSGGS
        +  ++ D      S    VGV++ +  GS
Subjt:  QMVVHVDELCNDNSRMYRVGVVVHNSGGS

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]3.6e-0526.95Show/hide
Query:  REQKKLWRLLFGKSVIQELD-YTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTAN-------VCNSIPPN
        +  KK+W L+F       ++   S  D +L L +       +      WA+W DRN+  HG S+     +CNWI  Y Q++  A          +S+PP 
Subjt:  REQKKLWRLLFGKSVIQELD-YTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTAN-------VCNSIPPN

Query:  RYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL
          R ++ P    M V+ D  C   S    +G+++ +  G L
Subjt:  RYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]2.3e-0726.39Show/hide
Query:  REQKKLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANV-----------CNSI
        +  K++W +L  ++  Q     SVQD  L L+E       + V VG WA+WNDRN +   + IP+ + + +WI  Y++DF   +V            +S 
Subjt:  REQKKLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANV-----------CNSI

Query:  PPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL
              ++  P    + ++VD  C  +     +G+V  N  G +
Subjt:  PPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.9e-1024.02Show/hide
Query:  VKDFMTPSLQWDTAKLERFLFQEDVNLITSMPIS---------------GRYTVRSGYKNHMLCKLEGPSSNSG----------SLRSILRQQIMLYSGA
        V  F+T    WD   +      ED +LI SMPIS               G Y+VRSGYK +M  K    S+++            L    + +I ++  A
Subjt:  VKDFMTPSLQWDTAKLERFLFQEDVNLITSMPIS---------------GRYTVRSGYKNHMLCKLEGPSSNSG----------SLRSILRQQIMLYSGA

Query:  REQ--------------------------------------KKLWRLLFG-KSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGK
         E                                       +++WR LF   + +   D  S  + + SL E      L    +  W +WNDRN+++HGK
Subjt:  REQ--------------------------------------KKLWRLLFG-KSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGK

Query:  SIPNLEDKCNWIQGYIQDFHTANVCNSIP
         +  +E KC W+  ++     A + N  P
Subjt:  SIPNLEDKCNWIQGYIQDFHTANVCNSIP

TrEMBL top hitse value%identityAlignment
A0A5C7H0P0 Uncharacterized protein3.9e-0526.36Show/hide
Query:  KLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYR-FYICPLLP
        ++WR L G  VIQ +  +      LSL           + +G W LW +RN+V+HG +     D   WI  +  +F  AN  N      ++  +  P   
Subjt:  KLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYR-FYICPLLP

Query:  QMVVHVDELCNDNSRMYRVGVVVHNSGGS
        +  ++ D      S    VGV++ +  GS
Subjt:  QMVVHVDELCNDNSRMYRVGVVVHNSGGS

A0A6J1BQ49 uncharacterized protein LOC1110047861.8e-0526.95Show/hide
Query:  REQKKLWRLLFGKSVIQELD-YTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTAN-------VCNSIPPN
        +  KK+W L+F       ++   S  D +L L +       +      WA+W DRN+  HG S+     +CNWI  Y Q++  A          +S+PP 
Subjt:  REQKKLWRLLFGKSVIQELD-YTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTAN-------VCNSIPPN

Query:  RYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL
          R ++ P    M V+ D  C   S    +G+++ +  G L
Subjt:  RYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL

A0A6J1CTE3 uncharacterized protein LOC1110145781.1e-0726.39Show/hide
Query:  REQKKLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANV-----------CNSI
        +  K++W +L  ++  Q     SVQD  L L+E       + V VG WA+WNDRN +   + IP+ + + +WI  Y++DF   +V            +S 
Subjt:  REQKKLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANV-----------CNSI

Query:  PPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL
              ++  P    + ++VD  C  +     +G+V  N  G +
Subjt:  PPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL

A0A6J1DX30 uncharacterized protein LOC1110248742.4e-1024.02Show/hide
Query:  VKDFMTPSLQWDTAKLERFLFQEDVNLITSMPIS---------------GRYTVRSGYKNHMLCKLEGPSSNSG----------SLRSILRQQIMLYSGA
        V  F+T    WD   +      ED +LI SMPIS               G Y+VRSGYK +M  K    S+++            L    + +I ++  A
Subjt:  VKDFMTPSLQWDTAKLERFLFQEDVNLITSMPIS---------------GRYTVRSGYKNHMLCKLEGPSSNSG----------SLRSILRQQIMLYSGA

Query:  REQ--------------------------------------KKLWRLLFG-KSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGK
         E                                       +++WR LF   + +   D  S  + + SL E      L    +  W +WNDRN+++HGK
Subjt:  REQ--------------------------------------KKLWRLLFG-KSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGK

Query:  SIPNLEDKCNWIQGYIQDFHTANVCNSIP
         +  +E KC W+  ++     A + N  P
Subjt:  SIPNLEDKCNWIQGYIQDFHTANVCNSIP

A0A803NGI9 Uncharacterized protein2.9e-0824.9Show/hide
Query:  VVKDFMTPSLQWDTAKLERFLFQEDVNLITSMPI---------------SGRYTVRSGYKNHMLCKLEGP--SSNSGSLRSILR---------QQIMLYS
        +V  ++T   +W+   L R     DV+ I S+P+               S  YTV+SGY  H+   LE    S++S + R ++          Q   L S
Subjt:  VVKDFMTPSLQWDTAKLERFLFQEDVNLITSMPI---------------SGRYTVRSGYKNHMLCKLEGP--SSNSGSLRSILR---------QQIMLYS

Query:  GAREQ-----------KKLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYI-------QDF
         A E            KK+WR+         +   S  D  + L      + +E +    W LWNDRNN +HGK  P L     W +          Q  
Subjt:  GAREQ-----------KKLWRLLFGKSVIQELDYTSVQDRFLSLLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYI-------QDF

Query:  HTANVCNSIPPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL
         + ++ +S        +I P L ++ ++VD  C+ +     VG+++ NS G +
Subjt:  HTANVCNSIPPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATTGTGTGGTTAAGGATTTTATGACCCCGTCATTACAATGGGACACTGCAAAGCTTGAAAGATTCCTCTTTCAGGAAGATGTCAATCTGATTACGTCAATGCC
AATTAGTGGACGGTATACAGTCCGAAGTGGTTATAAAAATCATATGCTATGTAAGTTGGAAGGACCGTCATCAAATTCAGGAAGTCTAAGAAGCATCCTGAGACAACAGA
TCATGCTTTATTCCGGTGCTCGAGAGCAAAAAAAACTATGGAGACTGTTGTTTGGGAAGAGTGTAATTCAGGAGTTGGATTATACATCTGTCCAAGATCGTTTCTTATCT
CTGCTAGAAGATGATCCAGGTAATACGTTGGAATGGGTATGTGTGGGTGCGTGGGCGTTATGGAATGACCGTAACAATGTACTGCATGGTAAATCCATACCTAATTTAGA
GGATAAATGTAACTGGATACAAGGCTATATCCAGGATTTTCATACAGCTAATGTATGCAACTCTATTCCTCCTAATAGGTATAGGTTCTACATCTGTCCTTTGCTTCCTC
AGATGGTTGTTCATGTGGACGAATTGTGTAATGACAATAGTCGTATGTACAGAGTTGGTGTGGTGGTTCACAATAGTGGGGGGTCCCTGGGGGAGGTTGAGGTTGATTTG
GAGGTCCAGGCTACTGTCTGGGATATTCGAGATCTTGGTTCCCATTTCAATAATGTGGAGTTTATGCATTCTCCAAGGGATCACAATTGGATTGCTCATAAACTAGCTCA
TCATGAAGAGGTCGAACCGGCGAAGCGGAGAGAGAACTCCCCCGACCCACAAGAAGTCCCTCGGCCTCGGCCCAAGGGAGAGGCCGAGGAGGAGGTCGGCCTCGGCCCAC
AGCCGAGGCCGACCAGGGCCAAAGGCCAGGAGAGAGAGGTCGGCCTCGGCCCACAGCCGAGGCCGACCAGGGCCAAAGGCCCAGGAGAGCAGAGGCTGGCAGCAACGAAA
ACCCTAACGGGAGCTTATAAAAGAGCAGATGATGCACATACCCAGGTCACGTTTCTCCCACTCAACTACAAATTCACTGTGTTGTCACGTGGAGCGAGGGATCGAGTCCT
GAGCAAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATTGTGTGGTTAAGGATTTTATGACCCCGTCATTACAATGGGACACTGCAAAGCTTGAAAGATTCCTCTTTCAGGAAGATGTCAATCTGATTACGTCAATGCC
AATTAGTGGACGGTATACAGTCCGAAGTGGTTATAAAAATCATATGCTATGTAAGTTGGAAGGACCGTCATCAAATTCAGGAAGTCTAAGAAGCATCCTGAGACAACAGA
TCATGCTTTATTCCGGTGCTCGAGAGCAAAAAAAACTATGGAGACTGTTGTTTGGGAAGAGTGTAATTCAGGAGTTGGATTATACATCTGTCCAAGATCGTTTCTTATCT
CTGCTAGAAGATGATCCAGGTAATACGTTGGAATGGGTATGTGTGGGTGCGTGGGCGTTATGGAATGACCGTAACAATGTACTGCATGGTAAATCCATACCTAATTTAGA
GGATAAATGTAACTGGATACAAGGCTATATCCAGGATTTTCATACAGCTAATGTATGCAACTCTATTCCTCCTAATAGGTATAGGTTCTACATCTGTCCTTTGCTTCCTC
AGATGGTTGTTCATGTGGACGAATTGTGTAATGACAATAGTCGTATGTACAGAGTTGGTGTGGTGGTTCACAATAGTGGGGGGTCCCTGGGGGAGGTTGAGGTTGATTTG
GAGGTCCAGGCTACTGTCTGGGATATTCGAGATCTTGGTTCCCATTTCAATAATGTGGAGTTTATGCATTCTCCAAGGGATCACAATTGGATTGCTCATAAACTAGCTCA
TCATGAAGAGGTCGAACCGGCGAAGCGGAGAGAGAACTCCCCCGACCCACAAGAAGTCCCTCGGCCTCGGCCCAAGGGAGAGGCCGAGGAGGAGGTCGGCCTCGGCCCAC
AGCCGAGGCCGACCAGGGCCAAAGGCCAGGAGAGAGAGGTCGGCCTCGGCCCACAGCCGAGGCCGACCAGGGCCAAAGGCCCAGGAGAGCAGAGGCTGGCAGCAACGAAA
ACCCTAACGGGAGCTTATAAAAGAGCAGATGATGCACATACCCAGGTCACGTTTCTCCCACTCAACTACAAATTCACTGTGTTGTCACGTGGAGCGAGGGATCGAGTCCT
GAGCAAAATCTGA
Protein sequenceShow/hide protein sequence
MANCVVKDFMTPSLQWDTAKLERFLFQEDVNLITSMPISGRYTVRSGYKNHMLCKLEGPSSNSGSLRSILRQQIMLYSGAREQKKLWRLLFGKSVIQELDYTSVQDRFLS
LLEDDPGNTLEWVCVGAWALWNDRNNVLHGKSIPNLEDKCNWIQGYIQDFHTANVCNSIPPNRYRFYICPLLPQMVVHVDELCNDNSRMYRVGVVVHNSGGSLGEVEVDL
EVQATVWDIRDLGSHFNNVEFMHSPRDHNWIAHKLAHHEEVEPAKRRENSPDPQEVPRPRPKGEAEEEVGLGPQPRPTRAKGQEREVGLGPQPRPTRAKGPGEQRLAATK
TLTGAYKRADDAHTQVTFLPLNYKFTVLSRGARDRVLSKI