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Lag0005963 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005963
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr6:34682431..34682778
RNA-Seq ExpressionLag0005963
SyntenyLag0005963
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022926214.1 uncharacterized protein LOC111433394 [Cucurbita moschata]2.1e-2046.96Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  +K + ++EVD + +I A +AS+ N L+++AL  +      V +V  +NQ A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSPATQLPCF
        EH F+  P+     F
Subjt:  EHNFEFSPATQLPCF

XP_022929949.1 uncharacterized protein LOC111436411 [Cucurbita moschata]8.0e-2046.09Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  +K + ++EVD + +I A +AS+ N L+++AL  +      V +   +NQ A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSPATQLPCF
        EH F+  P+     F
Subjt:  EHNFEFSPATQLPCF

XP_022960432.1 uncharacterized protein LOC111461168 [Cucurbita moschata]8.9e-1947.22Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  KK + ++EVD + +I A +AS+ N L+++A            +   M Q A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSP
        EH F+  P
Subjt:  EHNFEFSP

XP_023521407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo]6.1e-2046.09Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  +K + ++EVD + +I A +AS+ N L+++AL  +      V +   +NQ A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSPATQLPCF
        EH F+  P+     F
Subjt:  EHNFEFSPATQLPCF

XP_023521781.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo]3.4e-1849.53Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMAL--VSNVQQPPVVESVPFMNQVAVESYVYC
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  +K + ++EVD + +I A +AS+ N L+++AL   SN++ P  V +   +NQ A ES V C
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMAL--VSNVQQPPVVESVPFMNQVAVESYVYC

Query:  GEEHNFE
        GEEH F+
Subjt:  GEEHNFE

TrEMBL top hitse value%identityAlignment
A0A6J1EEI2 uncharacterized protein LOC1114333941.0e-2046.96Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  +K + ++EVD + +I A +AS+ N L+++AL  +      V +V  +NQ A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSPATQLPCF
        EH F+  P+     F
Subjt:  EHNFEFSPATQLPCF

A0A6J1EQ90 uncharacterized protein LOC1114364113.9e-2046.09Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  +K + ++EVD + +I A +AS+ N L+++AL  +      V +   +NQ A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSPATQLPCF
        EH F+  P+     F
Subjt:  EHNFEFSPATQLPCF

A0A6J1G7Q6 uncharacterized protein LOC1114515981.8e-1743.48Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A G +L+KT+NE YEILERI++ NCQW DVR +  KK + ++EVD + +I A +AS+ N L+++A            +   M Q A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSPATQLPCF
        +H F+  P+     F
Subjt:  EHNFEFSPATQLPCF

A0A6J1H7E4 uncharacterized protein LOC1114611684.3e-1947.22Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE
        +VDA A GA+L+KT+NE YEILERI++ NCQW+DVR +  KK + ++EVD + +I A +AS+ N L+++A            +   M Q A ES VYCGE
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGS-SKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGE

Query:  EHNFEFSP
        EH F+  P
Subjt:  EHNFEFSP

W9RRR5 Retrotrans_gag domain-containing protein6.6e-1240.74Show/hide
Query:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGSSKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGEE
        MVDA A GALLAK++NE YEILER++T + QWS  R  ++K   ++EVD +  + A +++L N  K+M   + V             Q    S VYCGE 
Subjt:  MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGSSKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGEE

Query:  HNFEFSPA
        H F+  P+
Subjt:  HNFEFSPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATGCTTTTGCGGGAGGGGCCCTTTTGGCAAAAACCTTTAATGAAACTTATGAGATTTTAGAGAGAATATCAACCTACAATTGTCAATGGTCAGACGTGAGAGG
CTCTAGTAAGAAAGTCAAAGCAATAATGGAAGTTGATGATGTGCCAACCATTAGGGCTGATATTGCATCGTTGGCTAATACTCTTAAAAGTATGGCACTTGTTAGCAATG
TTCAGCAGCCGCCAGTGGTGGAATCTGTTCCATTTATGAATCAAGTGGCAGTTGAATCTTATGTCTATTGTGGTGAAGAGCATAATTTTGAATTTTCCCCAGCAACCCAA
CTTCCGTGTTTTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATGCTTTTGCGGGAGGGGCCCTTTTGGCAAAAACCTTTAATGAAACTTATGAGATTTTAGAGAGAATATCAACCTACAATTGTCAATGGTCAGACGTGAGAGG
CTCTAGTAAGAAAGTCAAAGCAATAATGGAAGTTGATGATGTGCCAACCATTAGGGCTGATATTGCATCGTTGGCTAATACTCTTAAAAGTATGGCACTTGTTAGCAATG
TTCAGCAGCCGCCAGTGGTGGAATCTGTTCCATTTATGAATCAAGTGGCAGTTGAATCTTATGTCTATTGTGGTGAAGAGCATAATTTTGAATTTTCCCCAGCAACCCAA
CTTCCGTGTTTTTCATAG
Protein sequenceShow/hide protein sequence
MVDAFAGGALLAKTFNETYEILERISTYNCQWSDVRGSSKKVKAIMEVDDVPTIRADIASLANTLKSMALVSNVQQPPVVESVPFMNQVAVESYVYCGEEHNFEFSPATQ
LPCFS