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Lag0005989 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005989
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr6:35168200..35179992
RNA-Seq ExpressionLag0005989
SyntenyLag0005989
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]8.2e-0574.29Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-0461.54Show/hide
Query:  KEAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        ++ ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP
Subjt:  KEAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.7e-0570.27Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPVI
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFP++
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPVI
KAA0067076.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-0468.57Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-0468.57Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class4.0e-0574.29Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
A0A5A7TKJ4 Gag/pol protein6.8e-0561.54Show/hide
Query:  KEAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        ++ ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP
Subjt:  KEAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
A0A5A7VFG5 Ty1-copia retrotransposon protein8.0e-0670.27Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPVI
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFP++
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPVI
A0A5A7VKV9 Gag/pol protein2.0e-0468.57Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
A0A5D3DRR2 Gag/pol protein2.0e-0468.57Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
        VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAAGCGAAGCTATTTTCTATGAGCAGGAAAGAAGTATTAATCAAATCTATTGCCCAATTGAGGAAATTATCAATGAGGTTTTTCTTCCTGAAGATGCGGGAGT
GATCCTTGATATTCCTAGAGTGATGAGCAATGTTTGGTGCAAGGGAAAAGGGGAGCCAATTAAAATTTGGGACCAAATGTCGAGGCACTTATGCTCAGAGGACATCAAAA
AGGCAATTTTAGTGCTTTGGAACTTATGGAATGCTAGAAACATATGCAATATCAACAAGAAAAAGCCAGATCCCAACCAAATCAGCCAAGCTATTCATAATAATGTTGAA
GAGGTTTTAGAAGATAAAGAGCAGAACCTGGTTTCTCCTCGTATAGAGAACCATTCGAGTCACCTACTATGGAAGCCACTAAAAACAGCAACAAAATCACCTTCTCTTTG
CTGGAAAAACAGTCACGAACACCACCAAAAGAGTTGCACCGGTATTCTCCTTGGGACTAGTATTGAGCGGCTTGTGGGAACCAAGAATTCTAAGGCTTGGGAGTATTCTG
CAGAGAGTTCTGGAGAATATATTTCTGTCTCCACGGATATCGACCGTCAGCAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCC
CTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTAGTCCAACTAGCAAACAGAAACCCCTCTCGTGCCATAAAGAGGCATGGGTGAG
AGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGAGACATGACAACACAAGAAGGAATTCACTCCTTCCCTGTGATTACGG
ACACTTGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGTCATAGCAGGGAAGATCGATTGGTGGTG
TCTCAATTGTTGACGCTTGGTCCAAAATCAAGAAAGGTGTCCTTTGAAGTATTCAGAGTCGTCAGCGACGTTAATCGTGAAGTTGAAGATCAGTCAGAGATCAACTTCAT
CATTGAGGAGATCGAGACGCTCAAAGCTTCTCTACGAATTTCGTTGTTCTCCAAATGTTCGAGGGAAAGTAACACTTTGGCGCATGATTTAGCGCGAGTTGCTGCCTCCA
ATGGCGAGTTCGGTTTTTTGGGTCACTCTCTTCTTCTCTCTGAGGAAGATGAAGCGTTTTGGAGTGAACCTTCATTCCCCACTTGGTTCTCATCGGTTTTACCCGACGGG
TTTGGTGAACAAACTTTCTGTTTTAATGAATCGTTGCCGCCCAATCTTCCTTGCGCCACCGTCGATCTCACCGCCACCGCACTGCCCCTTCCCCTATTTTCTCTCGTTGC
CGACGTCTCTTCCTCTCGGCATTTGCGTCTTCGGCCGATGAAATCCCTCTCCCTTTCGGTTTCATCTTCTCGCCACTATAACCACGCGTTTGCAGCAATGCTACATGTTT
TCAACGTCATGTTTTTGCTTTCATTTGGCTCCAATCCATGGGTTTTAGTCTCCATCAAAGCGTTTCAGCAGTTCTGGTTTAAGCCTTCTTCGGGTGCTAACCATTTAGTA
TCAATTCGGGCTTGGATCAACACTTATTTAAGGGATTTTAGTGCTGATTGGTTAACTCCAGCAAGGTTCCCGCCCCTTTTCGCTTATTGCTTTACAAGCATGATGTGTGT
TGATATCATGTTGTTGAGGTTGTTTGTTGTGTGGTGGCTCACCGGATGTGAGCTACTTACCAGTACTGTGGTTATACTGATACCCCTCCCCTTCTTTTCCCCAACATTTT
CAGATTATGCAGGTGACGAGTTTTATGTGCTCGGTGATGTAGACGAGGAGATTCACGAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAAAGCGAAGCTATTTTCTATGAGCAGGAAAGAAGTATTAATCAAATCTATTGCCCAATTGAGGAAATTATCAATGAGGTTTTTCTTCCTGAAGATGCGGGAGT
GATCCTTGATATTCCTAGAGTGATGAGCAATGTTTGGTGCAAGGGAAAAGGGGAGCCAATTAAAATTTGGGACCAAATGTCGAGGCACTTATGCTCAGAGGACATCAAAA
AGGCAATTTTAGTGCTTTGGAACTTATGGAATGCTAGAAACATATGCAATATCAACAAGAAAAAGCCAGATCCCAACCAAATCAGCCAAGCTATTCATAATAATGTTGAA
GAGGTTTTAGAAGATAAAGAGCAGAACCTGGTTTCTCCTCGTATAGAGAACCATTCGAGTCACCTACTATGGAAGCCACTAAAAACAGCAACAAAATCACCTTCTCTTTG
CTGGAAAAACAGTCACGAACACCACCAAAAGAGTTGCACCGGTATTCTCCTTGGGACTAGTATTGAGCGGCTTGTGGGAACCAAGAATTCTAAGGCTTGGGAGTATTCTG
CAGAGAGTTCTGGAGAATATATTTCTGTCTCCACGGATATCGACCGTCAGCAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCC
CTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTGTAGTCCAACTAGCAAACAGAAACCCCTCTCGTGCCATAAAGAGGCATGGGTGAG
AGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGAGACATGACAACACAAGAAGGAATTCACTCCTTCCCTGTGATTACGG
ACACTTGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAGTCATAGCAGGGAAGATCGATTGGTGGTG
TCTCAATTGTTGACGCTTGGTCCAAAATCAAGAAAGGTGTCCTTTGAAGTATTCAGAGTCGTCAGCGACGTTAATCGTGAAGTTGAAGATCAGTCAGAGATCAACTTCAT
CATTGAGGAGATCGAGACGCTCAAAGCTTCTCTACGAATTTCGTTGTTCTCCAAATGTTCGAGGGAAAGTAACACTTTGGCGCATGATTTAGCGCGAGTTGCTGCCTCCA
ATGGCGAGTTCGGTTTTTTGGGTCACTCTCTTCTTCTCTCTGAGGAAGATGAAGCGTTTTGGAGTGAACCTTCATTCCCCACTTGGTTCTCATCGGTTTTACCCGACGGG
TTTGGTGAACAAACTTTCTGTTTTAATGAATCGTTGCCGCCCAATCTTCCTTGCGCCACCGTCGATCTCACCGCCACCGCACTGCCCCTTCCCCTATTTTCTCTCGTTGC
CGACGTCTCTTCCTCTCGGCATTTGCGTCTTCGGCCGATGAAATCCCTCTCCCTTTCGGTTTCATCTTCTCGCCACTATAACCACGCGTTTGCAGCAATGCTACATGTTT
TCAACGTCATGTTTTTGCTTTCATTTGGCTCCAATCCATGGGTTTTAGTCTCCATCAAAGCGTTTCAGCAGTTCTGGTTTAAGCCTTCTTCGGGTGCTAACCATTTAGTA
TCAATTCGGGCTTGGATCAACACTTATTTAAGGGATTTTAGTGCTGATTGGTTAACTCCAGCAAGGTTCCCGCCCCTTTTCGCTTATTGCTTTACAAGCATGATGTGTGT
TGATATCATGTTGTTGAGGTTGTTTGTTGTGTGGTGGCTCACCGGATGTGAGCTACTTACCAGTACTGTGGTTATACTGATACCCCTCCCCTTCTTTTCCCCAACATTTT
CAGATTATGCAGGTGACGAGTTTTATGTGCTCGGTGATGTAGACGAGGAGATTCACGAGGGATGA
Protein sequenceShow/hide protein sequence
MVESEAIFYEQERSINQIYCPIEEIINEVFLPEDAGVILDIPRVMSNVWCKGKGEPIKIWDQMSRHLCSEDIKKAILVLWNLWNARNICNINKKKPDPNQISQAIHNNVE
EVLEDKEQNLVSPRIENHSSHLLWKPLKTATKSPSLCWKNSHEHHQKSCTGILLGTSIERLVGTKNSKAWEYSAESSGEYISVSTDIDRQQQVSPSRVFVPQLGQITVLP
LGYLLVLKYQCSSNEQPVCSPTSKQKPLSCHKEAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPVITDTCEGLTYRHRSTSMDTEMFYSEKSSASHSREDRLVV
SQLLTLGPKSRKVSFEVFRVVSDVNREVEDQSEINFIIEEIETLKASLRISLFSKCSRESNTLAHDLARVAASNGEFGFLGHSLLLSEEDEAFWSEPSFPTWFSSVLPDG
FGEQTFCFNESLPPNLPCATVDLTATALPLPLFSLVADVSSSRHLRLRPMKSLSLSVSSSRHYNHAFAAMLHVFNVMFLLSFGSNPWVLVSIKAFQQFWFKPSSGANHLV
SIRAWINTYLRDFSADWLTPARFPPLFAYCFTSMMCVDIMLLRLFVVWWLTGCELLTSTVVILIPLPFFSPTFSDYAGDEFYVLGDVDEEIHEG