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Lag0006002 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006002
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:35534410..35534712
RNA-Seq ExpressionLag0006002
SyntenyLag0006002
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8817564.1 hypothetical protein D1007_04663 [Hordeum vulgare]9.1e-1243.75Show/hide
Query:  MRMWLRMDITSPLQRGAKIRV-KGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIGR---EGKGGK
        +R+ +R+DI  PL RG  ++  + G+E WCPF+YE L  FC+ CGIIGH  +EC   S      E   YG WLR    K+SV+S  R   EG+ G+
Subjt:  MRMWLRMDITSPLQRGAKIRV-KGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIGR---EGKGGK

XP_017251113.1 PREDICTED: uncharacterized protein LOC108221766 [Daucus carota subsp. sativus]1.7e-1036.73Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIGREGKGGKWCERGG
        +R+ + MD+  PL+R  KI+ +GG   W  F+YERL  FCF CG++GH+ RECG      +      YG WLR       + +   +  G +W   GG
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIGREGKGGKWCERGG

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.7e-1338.1Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNS-----IGREGKGGKWCE
        +R+ +++D++ PL+RG K++   G+++WCP +YE+L DFC+ CG IGH+ REC + S          YGDWLR    K+SV+        R G+ G+  +
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNS-----IGREGKGGKWCE

Query:  RGGGK
          GG+
Subjt:  RGGGK

XP_031116488.1 uncharacterized protein LOC116020112 [Ipomoea triloba]1.0e-1041.67Show/hide
Query:  RMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIG
        R+ +++D+T+PL+R  K+  K G   W  F+YERL  FCF CG++GH+ + C KA  E    E F YG WLR    +  V  +G
Subjt:  RMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIG

XP_040991016.1 uncharacterized protein LOC121238254 [Juglans microcarpa x Juglans regia]5.0e-1037.25Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFV--YGDWLRGLDDKESVNSIGREGKGGKWCERGG
        +R+ +  ++T PL RGAK+ + GG  VW  F YERL +FC+ CG +GHT ++C   + ++ V +     YG WLR     E  N        G++   GG
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFV--YGDWLRGLDDKESVNSIGREGKGGKWCERGG

Query:  GK
        GK
Subjt:  GK

TrEMBL top hitse value%identityAlignment
A0A2N9E9A1 Reverse transcriptase domain-containing protein1.7e-1142.17Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC-----GKASVEANVFEGFVYGDWLRGLDDK
        MR+ +R+D+T PL RG K R++ GRE W  F+YERL +FC+ CG++ H+ ++C      K S+ A   E   +G WLR  +D+
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC-----GKASVEANVFEGFVYGDWLRGLDDK

A0A2N9FM69 Uncharacterized protein1.7e-1142.17Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC-----GKASVEANVFEGFVYGDWLRGLDDK
        MR+ +R+D+T PL RG K R++ GRE W  F+YERL +FC+ CG++ H+ ++C      K S+ A   E   +G WLR  +D+
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC-----GKASVEANVFEGFVYGDWLRGLDDK

A0A2N9GZI9 Reverse transcriptase domain-containing protein1.7e-1142.17Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC-----GKASVEANVFEGFVYGDWLRGLDDK
        MR+ +R+D+T PL RG K R++ GRE W  F+YERL +FC+ CG++ H+ ++C      K S+ A   E   +G WLR  +D+
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC-----GKASVEANVFEGFVYGDWLRGLDDK

A0A6J1D765 uncharacterized protein LOC1110179028.1e-1438.1Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNS-----IGREGKGGKWCE
        +R+ +++D++ PL+RG K++   G+++WCP +YE+L DFC+ CG IGH+ REC + S          YGDWLR    K+SV+        R G+ G+  +
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNS-----IGREGKGGKWCE

Query:  RGGGK
          GG+
Subjt:  RGGGK

A0A7N2N045 Uncharacterized protein2.9e-1137.63Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFE--GFVYGDWLRGLDDKESVNSIGREGKGG
        +R+ +++D+T  L RG K++++GG + W  F+YERL +FC+ CG++ H  R+C +A  + N  E     YG WLRG    E++   G E   G
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFE--GFVYGDWLRGLDDKESVNSIGREGKGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding9.8e-0432.08Show/hide
Query:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC
        +R+ +RMD T PL+   ++R          F+YE+L   C NC  + H    C
Subjt:  MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCREC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATGTGGTTGAGAATGGATATAACTAGCCCCCTGCAGAGGGGAGCAAAAATCAGAGTCAAAGGGGGAAGGGAGGTGTGGTGCCCGTTCCAATATGAGAGACTCCT
TGATTTTTGTTTTAACTGTGGAATAATTGGCCATACTTGCAGAGAGTGCGGGAAAGCTAGTGTGGAGGCCAATGTTTTCGAAGGTTTTGTGTATGGGGATTGGCTTCGAG
GCCTCGACGATAAGGAGAGTGTTAACTCCATTGGGAGAGAGGGAAAAGGAGGGAAGTGGTGTGAGAGAGGAGGTGGGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATGTGGTTGAGAATGGATATAACTAGCCCCCTGCAGAGGGGAGCAAAAATCAGAGTCAAAGGGGGAAGGGAGGTGTGGTGCCCGTTCCAATATGAGAGACTCCT
TGATTTTTGTTTTAACTGTGGAATAATTGGCCATACTTGCAGAGAGTGCGGGAAAGCTAGTGTGGAGGCCAATGTTTTCGAAGGTTTTGTGTATGGGGATTGGCTTCGAG
GCCTCGACGATAAGGAGAGTGTTAACTCCATTGGGAGAGAGGGAAAAGGAGGGAAGTGGTGTGAGAGAGGAGGTGGGAAATGA
Protein sequenceShow/hide protein sequence
MRMWLRMDITSPLQRGAKIRVKGGREVWCPFQYERLLDFCFNCGIIGHTCRECGKASVEANVFEGFVYGDWLRGLDDKESVNSIGREGKGGKWCERGGGK