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Lag0006006 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006006
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr6:35561382..35561744
RNA-Seq ExpressionLag0006006
SyntenyLag0006006
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-2361.36Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK
        MA + + LKH WT++EEA LVE LVELV+ GGWR DNGTF+P  +++ LKR + AI EM G  CS FGWNDE KC+  EKEV+D WVK
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]6.4e-2343.22Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP-------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKC
        M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTF+P                         DC++++LKR + AI EM G  CSGFGWNDE KC
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP-------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKC

Query:  VQVEKEVYDAWVKIRSLV
        +  EKE++D WV++R+++
Subjt:  VQVEKEVYDAWVKIRSLV

KAA0057175.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2254.84Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLV
        M  + +  KH WT++EEA LVE LVELV+ GGWR DNG F+P  +++ +KR + A+ EM G  CSGFGWNDE KC+  EKEV+D WVK    V
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLV

XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.7e-2354.05Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCV
        MA  +K  KHIWT+ E+ARLVESL++LV E GW+ D  TFKP                        +CKV+ LKRQY AI+EML   C+GFGWNDEFKCV
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCV

Query:  QVEKEVYDAWV
        QVEKEV+D WV
Subjt:  QVEKEVYDAWV

XP_038896734.1 uncharacterized protein At2g29880-like [Benincasa hispida]2.9e-2353.21Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP---------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVE
        MAG +K  KHIWT+ E+ARLVESL+ +V E  W+ DNGTFKP                     +CKV+ LK+QY AI+EML   C+ FGWNDEFKCV+VE
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP---------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVE

Query:  KEVYDAWVK
        KEV+D WV+
Subjt:  KEVYDAWVK

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein1.4e-2361.36Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK
        MA + + LKH WT++EEA LVE LVELV+ GGWR DNGTF+P  +++ LKR + AI EM G  CS FGWNDE KC+  EKEV+D WVK
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK

A0A5A7T3X9 Retrotransposon protein3.1e-2343.22Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP-------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKC
        M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTF+P                         DC++++LKR + AI EM G  CSGFGWNDE KC
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP-------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKC

Query:  VQVEKEVYDAWVKIRSLV
        +  EKE++D WV++R+++
Subjt:  VQVEKEVYDAWVKIRSLV

A0A5A7U437 Retrotransposon protein1.2e-2253.85Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCK---VQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK
        M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTF+PD     +++LKR + AI EM G  CSGFGWNDE KC+  EKE++D WV+
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCK---VQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVK

A0A5A7V8K9 Retrotransposon protein1.5e-2246.49Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCV
        M  + +  KH WT++EEA LVE LVELV+ GGWR DNGTF+P                        D +++ +KR + A+ EM G +CSGFGWNDE KC+
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKP------------------------DCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCV

Query:  QVEKEVYDAWVKIR
          EKEV+D WVK+R
Subjt:  QVEKEVYDAWVKIR

A0A5D3D5F3 Retrotransposon protein6.9e-2354.84Show/hide
Query:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLV
        M  + +  KH WT++EEA LVE LVELV+ GGWR DNG F+P  +++ +KR + A+ EM G  CSGFGWNDE KC+  EKEV+D WVK    V
Subjt:  MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGTGCAGATAAACACCTGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAA
CGGGACCTTCAAGCCCGACTGTAAGGTGCAGTCCTTGAAACGGCAATACAGTGCCATCTTAGAGATGTTGGGTCTGGACTGCAGTGGATTCGGTTGGAATGATGAGTTTA
AATGCGTCCAGGTTGAGAAGGAGGTCTATGATGCATGGGTGAAGATACGGTCATTAGTCATTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGTGCAGATAAACACCTGAAACACATCTGGACGAGGCAGGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAA
CGGGACCTTCAAGCCCGACTGTAAGGTGCAGTCCTTGAAACGGCAATACAGTGCCATCTTAGAGATGTTGGGTCTGGACTGCAGTGGATTCGGTTGGAATGATGAGTTTA
AATGCGTCCAGGTTGAGAAGGAGGTCTATGATGCATGGGTGAAGATACGGTCATTAGTCATTCATTGA
Protein sequenceShow/hide protein sequence
MAGADKHLKHIWTRQEEARLVESLVELVHEGGWRGDNGTFKPDCKVQSLKRQYSAILEMLGLDCSGFGWNDEFKCVQVEKEVYDAWVKIRSLVIH