; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006007 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006007
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr6:35562333..35563556
RNA-Seq ExpressionLag0006007
SyntenyLag0006007
Gene Ontology termsNA
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042501.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-6659.11Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------
        MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAILC LL   +GL   +IVDVEEMVAMFLH++AHDVKN+                
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------

Query:  ---------------------NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYY
                             N LGALDGTY+KV+V A DRP +R R GEIATNVL V   KG+F++V  GWEGSAADSR+LRD ISR NGL VPKGYYY
Subjt:  ---------------------NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYY

Query:  LCDVGYPNVEGFLASYRGERYHLTE
        LCD GYPN EGFLA YRG+RYHL E
Subjt:  LCDVGYPNVEGFLASYRGERYHLTE

KAA0045643.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-6663.29Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------
        MNN++R+ +  P  RH+IR+LA F +IHESDL CR+STRMDRR FAILC LL   +GL   +IVDVEEMVAMFLH++AHDVKN+                
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------

Query:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG
           N LGALDG Y+KV+V A DRP +R R GEIATNVL V   KG+F++V +GWEGSAADSR+LRD ISR NGL VPKGYYYLCD GYPN EGFLA YRG
Subjt:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG

Query:  ERYHLTE
        +RYHL E
Subjt:  ERYHLTE

KAA0057256.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-6662.8Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------
        MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAILC LL   +GL   +IV+VEEMVAMFLH++AHDVKN+                
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------

Query:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG
           N LGALDGTY+KV+V A DRP +R R G+IATNVL V   KG+F++V + WEGSAADSR+LRD ISR NGL VPKGYYYLCD GYPN EGFL SYRG
Subjt:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG

Query:  ERYHLTE
        +RYHL E
Subjt:  ERYHLTE

KAA0063060.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-6661.9Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKN-----------------
        MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+ST MDRR FAILC LL   +GL   +IVDVEEM+AMFLH++AHDVKN                 
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKN-----------------

Query:  -----QNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLAS
             +N LGALDGTY+KV+V A DRP +R R GEIATNVL V   K +F++V +GWEGSAADSR+LRD ISR NGL VPKGYYYLCD GYPN EGFLA 
Subjt:  -----QNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLAS

Query:  YRGERYHLTE
        YRG+RYHL E
Subjt:  YRGERYHLTE

TYJ97297.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-6665.98Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ------NYLGALDGTY
        MNN++R+ +  P  RH+IR+LA F +I+ESDL CR+ST+MDRR FAILC LL   +GL   +IVDVEEMVAMFLH++AHDVKN+      N LGALD TY
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ------NYLGALDGTY

Query:  VKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRGERYHLTE
        +KV+V A DRP +R R GEIATN L V   KG+F++V SGWEGSAADSR+LRD +SR NGL VPKGYYYLCD GYPN EGFLA YRG+RYHL E
Subjt:  VKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRGERYHLTE

TrEMBL top hitse value%identityAlignment
A0A5A7TLQ0 Retrotransposon protein4.4e-6659.11Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------
        MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAILC LL   +GL   +IVDVEEMVAMFLH++AHDVKN+                
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------

Query:  ---------------------NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYY
                             N LGALDGTY+KV+V A DRP +R R GEIATNVL V   KG+F++V  GWEGSAADSR+LRD ISR NGL VPKGYYY
Subjt:  ---------------------NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYY

Query:  LCDVGYPNVEGFLASYRGERYHLTE
        LCD GYPN EGFLA YRG+RYHL E
Subjt:  LCDVGYPNVEGFLASYRGERYHLTE

A0A5A7TQ24 Retrotransposon protein6.9e-6763.29Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------
        MNN++R+ +  P  RH+IR+LA F +IHESDL CR+STRMDRR FAILC LL   +GL   +IVDVEEMVAMFLH++AHDVKN+                
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------

Query:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG
           N LGALDG Y+KV+V A DRP +R R GEIATNVL V   KG+F++V +GWEGSAADSR+LRD ISR NGL VPKGYYYLCD GYPN EGFLA YRG
Subjt:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG

Query:  ERYHLTE
        +RYHL E
Subjt:  ERYHLTE

A0A5A7USW5 Retrotransposon protein6.9e-6762.8Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------
        MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAILC LL   +GL   +IV+VEEMVAMFLH++AHDVKN+                
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ----------------

Query:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG
           N LGALDGTY+KV+V A DRP +R R G+IATNVL V   KG+F++V + WEGSAADSR+LRD ISR NGL VPKGYYYLCD GYPN EGFL SYRG
Subjt:  ---NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRG

Query:  ERYHLTE
        +RYHL E
Subjt:  ERYHLTE

A0A5A7V738 Retrotransposon protein2.0e-6661.9Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKN-----------------
        MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+ST MDRR FAILC LL   +GL   +IVDVEEM+AMFLH++AHDVKN                 
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKN-----------------

Query:  -----QNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLAS
             +N LGALDGTY+KV+V A DRP +R R GEIATNVL V   K +F++V +GWEGSAADSR+LRD ISR NGL VPKGYYYLCD GYPN EGFLA 
Subjt:  -----QNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLAS

Query:  YRGERYHLTE
        YRG+RYHL E
Subjt:  YRGERYHLTE

A0A5D3BDU5 Retrotransposon protein1.5e-6665.98Show/hide
Query:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ------NYLGALDGTY
        MNN++R+ +  P  RH+IR+LA F +I+ESDL CR+ST+MDRR FAILC LL   +GL   +IVDVEEMVAMFLH++AHDVKN+      N LGALD TY
Subjt:  MNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKNQ------NYLGALDGTY

Query:  VKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRGERYHLTE
        +KV+V A DRP +R R GEIATN L V   KG+F++V SGWEGSAADSR+LRD +SR NGL VPKGYYYLCD GYPN EGFLA YRG+RYHL E
Subjt:  VKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRGERYHLTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.8e-1225.76Show/hide
Query:  FRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAH-----DV-----KNQ-----------------------------
        +R + +    C +  RM   CF  LC++L     L     + +EE VAMFL I  H     DV     +NQ                             
Subjt:  FRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAH-----DV-----KNQ-----------------------------

Query:  -------------------NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGL-IVPKGYYYL
                            ++GA+DGT+V V V    +  Y  R+   + N++ +   K  F ++ +G  GS  D+ VL+      +   + P   YYL
Subjt:  -------------------NYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGL-IVPKGYYYL

Query:  CDVGYPNVEGFLASYRGE-----RYHLTE
         D GYPN +G LA YR       RYH+++
Subjt:  CDVGYPNVEGFLASYRGE-----RYHLTE

AT5G28950.1 unknown protein5.3e-1144.59Show/hide
Query:  LGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISR-PNGLIVPK
        +GA+D T++   VS    P +R R G+I+ N+L       EF++V SGWEGSA DS+VL D ++R  N L VP+
Subjt:  LGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISR-PNGLIVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.8e-1050.82Show/hide
Query:  FIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRGERYHLTE
        FI+V SGWEGSA DSRVL D + +          +YL D G+ N   FLA +RG RYHL E
Subjt:  FIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEGFLASYRGERYHLTE

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)6.4e-1726.57Show/hide
Query:  FRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKN----------------------------------------
        +++++  +  C E+ RMD+  F  LC LL     L     + +E  +A+FL I+ H+++                                         
Subjt:  FRLIHESDLCCRESTRMDRRCFAILCSLLIMTSGLVGKKIVDVEEMVAMFLHIVAHDVKN----------------------------------------

Query:  ---------QNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEG
                 ++ +G +D  ++ V V   ++  +R  NG +  NVL        F +V +GWEGSA+D +VL   ++R N L VP+G YY+ D  YPN+ G
Subjt:  ---------QNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLCDVGYPNVEG

Query:  FLASYRG
        F+A Y G
Subjt:  FLASYRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTAGGCATTACGTTATGGGCACCCGTGGCGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGCTGAAGTAGTACCGTTCCTAATGGATTCCATAACCCCACA
TGAACTTGTGTTCGTACTTTCAATAATGGTTGACTCTAACCTGATTAACTCCTTCATGAACAACCACCGTAGGATAGAAAACCAAACTCCCTACCTCAGACACCAGATAA
GGCAGTTAGCCTGCTTCCGGTTAATTCATGAAAGTGACCTATGTTGCCGAGAAAGCACCAGGATGGATAGAAGATGTTTTGCCATTCTATGTAGTTTGTTGATAATGACT
TCCGGGTTGGTAGGAAAGAAAATCGTAGACGTCGAAGAGATGGTCGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCAAAATTATTTAGGTGCATTGGACGG
TACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGATGCGAAATGGTGAGATTGCAACAAATGTATTGGACGTTGTGTTGCCAAAAGGTGAATTCA
TTTTTGTTACGTCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGTTATATCACGCCCCAATGGACTAATAGTGCCGAAGGGTTACTACTACCTTTGT
GATGTTGGGTACCCAAACGTAGAGGGTTTCTTGGCATCTTACAGAGGAGAGCGGTACCACTTAACCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATTTAGGCATTACGTTATGGGCACCCGTGGCGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGCTGAAGTAGTACCGTTCCTAATGGATTCCATAACCCCACA
TGAACTTGTGTTCGTACTTTCAATAATGGTTGACTCTAACCTGATTAACTCCTTCATGAACAACCACCGTAGGATAGAAAACCAAACTCCCTACCTCAGACACCAGATAA
GGCAGTTAGCCTGCTTCCGGTTAATTCATGAAAGTGACCTATGTTGCCGAGAAAGCACCAGGATGGATAGAAGATGTTTTGCCATTCTATGTAGTTTGTTGATAATGACT
TCCGGGTTGGTAGGAAAGAAAATCGTAGACGTCGAAGAGATGGTCGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCAAAATTATTTAGGTGCATTGGACGG
TACGTACGTAAAGGTTCATGTTAGTGCGGCTGATCGACCAAGGTATAGGATGCGAAATGGTGAGATTGCAACAAATGTATTGGACGTTGTGTTGCCAAAAGGTGAATTCA
TTTTTGTTACGTCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGATGTTATATCACGCCCCAATGGACTAATAGTGCCGAAGGGTTACTACTACCTTTGT
GATGTTGGGTACCCAAACGTAGAGGGTTTCTTGGCATCTTACAGAGGAGAGCGGTACCACTTAACCGAGTAG
Protein sequenceShow/hide protein sequence
MHLGITLWAPVANQTSLTNMKRVAEVVPFLMDSITPHELVFVLSIMVDSNLINSFMNNHRRIENQTPYLRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLIMT
SGLVGKKIVDVEEMVAMFLHIVAHDVKNQNYLGALDGTYVKVHVSAADRPRYRMRNGEIATNVLDVVLPKGEFIFVTSGWEGSAADSRVLRDVISRPNGLIVPKGYYYLC
DVGYPNVEGFLASYRGERYHLTE