; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006013 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006013
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:35730720..35731409
RNA-Seq ExpressionLag0006013
SyntenyLag0006013
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.4e-1227.07Show/hide
Query:  MVEHLNTKEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGP------------WSAPKPNAWKLNSDVAW
        +V  L+ +E+   +++ W +W+ RN++             RSI        +         R Q      P            WSAP  N WKLN+D +W
Subjt:  MVEHLNTKEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGP------------WSAPKPNAWKLNSDVAW

Query:  IKGKSYGGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLS
         + +  GGIGW++ D    ++ +G+  I  K  I +LE   I+ G++      +Q + P+ +ESDS+E+I+++  E  DL+
Subjt:  IKGKSYGGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.4e-1528.31Show/hide
Query:  KEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIER----------DFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGI
        +E  + +I+ W +W+ RNK+      P T   Q +I+R          + K    N   +L   R     +   W  P  N+WKLN++ AW    + GGI
Subjt:  KEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIER----------DFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGI

Query:  GWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRAL
        GW++ D    +I +  ++I  +  I  LE  AI EG+++      +   P+ +ESDSLE I +L+ +  D +E   + + I      ++ V  RH +R  
Subjt:  GWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRAL

Query:  NSEAHCVARLVCSFDFARD
        N  AH +AR     D   +
Subjt:  NSEAHCVARLVCSFDFARD

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.6e-1429.85Show/hide
Query:  GLILMWNLWKFRNKTENST-SLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLICS
        GL+L+W++W +RN+  +ST   P +   +   E    E   N   NL+        + G W+ P  + WKLN D  W+     GG+GW+V DS    I +
Subjt:  GLILMWNLWKFRNKTENST-SLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLICS

Query:  GSKMINRKWPIKSLEAKAILE-GIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCS
                  +K+L     LE GIK            +++ESD LE++ I+N  +  L+E   I + I  +   L    F+H     N  AH +AR  C 
Subjt:  GSKMINRKWPIKSLEAKAILE-GIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCS

Query:  F
        F
Subjt:  F

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.5e-1429.25Show/hide
Query:  MVEHLNTKEIDKGLILMWNLWKFRN----KTENSTSLPTTDSFQRSIERDFKEL-EENYLSNLSASR-PQSQASQGPWSAPKPNAWKLNSDVAWIKGKSY
        M++  + +++D  LI  W +W  RN    + E+S       SF   I++  K + E +Y S  S S   ++  ++  W  P  + W LN+D +W      
Subjt:  MVEHLNTKEIDKGLILMWNLWKFRN----KTENSTSLPTTDSFQRSIERDFKEL-EENYLSNLSASR-PQSQASQGPWSAPKPNAWKLNSDVAWIKGKSY

Query:  GGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN
        GGIGW++   +  ++ +G++ +     +K LEA AILEG+++  +  V R  PL +E+DS E+  +LN +  DL++T  + + IL      + + F    
Subjt:  GGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN

Query:  RALNSEAHCVAR
        R  N  AH +A+
Subjt:  RALNSEAHCVAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.1e-1528.83Show/hide
Query:  KEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIE--------RDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGW
        +E  + +I+ W +W+ RNK+        T   Q  I+        RD     ++   +L   R     +   W  P  N+WKLN+D AW    + GGIGW
Subjt:  KEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIE--------RDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGW

Query:  VVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSF-ADTC--VQRQ--IPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN
        ++ D    +I +  ++I  +  I  LE  AI EG+++   + C  +Q++   P+ +ESDSLE I +L+ +  D +E   + + I      +K V  RH +
Subjt:  VVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSF-ADTC--VQRQ--IPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN

Query:  RALNSEAHCVARLVCSFDFARD
        R  N  AH +AR     D   +
Subjt:  RALNSEAHCVARLVCSFDFARD

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132167.0e-1327.07Show/hide
Query:  MVEHLNTKEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGP------------WSAPKPNAWKLNSDVAW
        +V  L+ +E+   +++ W +W+ RN++             RSI        +         R Q      P            WSAP  N WKLN+D +W
Subjt:  MVEHLNTKEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGP------------WSAPKPNAWKLNSDVAW

Query:  IKGKSYGGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLS
         + +  GGIGW++ D    ++ +G+  I  K  I +LE   I+ G++      +Q + P+ +ESDS+E+I+++  E  DL+
Subjt:  IKGKSYGGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLS

A0A6J1D4B6 uncharacterized protein LOC1110171811.3e-1429.85Show/hide
Query:  GLILMWNLWKFRNKTENST-SLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLICS
        GL+L+W++W +RN+  +ST   P +   +   E    E   N   NL+        + G W+ P  + WKLN D  W+     GG+GW+V DS    I +
Subjt:  GLILMWNLWKFRNKTENST-SLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLICS

Query:  GSKMINRKWPIKSLEAKAILE-GIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCS
                  +K+L     LE GIK            +++ESD LE++ I+N  +  L+E   I + I  +   L    F+H     N  AH +AR  C 
Subjt:  GSKMINRKWPIKSLEAKAILE-GIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCS

Query:  F
        F
Subjt:  F

A0A6J1DNV9 uncharacterized protein LOC1110224037.5e-1529.25Show/hide
Query:  MVEHLNTKEIDKGLILMWNLWKFRN----KTENSTSLPTTDSFQRSIERDFKEL-EENYLSNLSASR-PQSQASQGPWSAPKPNAWKLNSDVAWIKGKSY
        M++  + +++D  LI  W +W  RN    + E+S       SF   I++  K + E +Y S  S S   ++  ++  W  P  + W LN+D +W      
Subjt:  MVEHLNTKEIDKGLILMWNLWKFRN----KTENSTSLPTTDSFQRSIERDFKEL-EENYLSNLSASR-PQSQASQGPWSAPKPNAWKLNSDVAWIKGKSY

Query:  GGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN
        GGIGW++   +  ++ +G++ +     +K LEA AILEG+++  +  V R  PL +E+DS E+  +LN +  DL++T  + + IL      + + F    
Subjt:  GGIGWVVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN

Query:  RALNSEAHCVAR
        R  N  AH +A+
Subjt:  RALNSEAHCVAR

A0A6J1DSV1 uncharacterized protein LOC1110236082.0e-1528.83Show/hide
Query:  KEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIE--------RDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGW
        +E  + +I+ W +W+ RNK+        T   Q  I+        RD     ++   +L   R     +   W  P  N+WKLN+D AW    + GGIGW
Subjt:  KEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIE--------RDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGW

Query:  VVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSF-ADTC--VQRQ--IPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN
        ++ D    +I +  ++I  +  I  LE  AI EG+++   + C  +Q++   P+ +ESDSLE I +L+ +  D +E   + + I      +K V  RH +
Subjt:  VVHDSNRSLICSGSKMINRKWPIKSLEAKAILEGIKSF-ADTC--VQRQ--IPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCN

Query:  RALNSEAHCVARLVCSFDFARD
        R  N  AH +AR     D   +
Subjt:  RALNSEAHCVARLVCSFDFARD

A0A803L9N8 Uncharacterized protein8.6e-1129.56Show/hide
Query:  LILMWNLWKFRNK-TENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLICSG
        L+ +W +W+ RNK       +    +  +++   F E     L   + S  +S    G W  P  + +KLN+D +  K +  GG+G VV D+   ++ + 
Subjt:  LILMWNLWKFRNK-TENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLICSG

Query:  SKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCSFD
         K +N    I  +EA A+L G+++  D   ++   L+V SD L++I++LNG   + S T+ I   IL  A     V F  C R  N  AH +A L  S  
Subjt:  SKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCSFD

Query:  FAR
          R
Subjt:  FAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAACACTTAAATACAAAGGAGATTGACAAGGGACTCATTCTTATGTGGAACCTATGGAAGTTTAGGAACAAAACAGAGAACTCCACATCCCTCCCAACAACAGA
TTCCTTTCAGAGAAGCATTGAAAGAGACTTCAAAGAGCTGGAAGAAAATTACCTCTCAAATCTGTCAGCCAGCAGACCTCAGAGCCAAGCGAGTCAAGGTCCGTGGTCAG
CCCCGAAGCCAAATGCCTGGAAACTGAATTCAGATGTAGCGTGGATCAAAGGAAAATCTTATGGGGGAATTGGATGGGTGGTCCATGACTCGAATCGATCCCTGATTTGT
AGCGGATCAAAGATGATTAATCGTAAGTGGCCCATAAAATCATTGGAAGCTAAAGCTATTTTGGAAGGAATCAAGTCATTTGCGGATACCTGTGTTCAGCGCCAAATCCC
TCTCAAGGTTGAGTCTGATTCTTTAGAGATCATCAAGATCTTGAATGGAGAAACGACTGATTTATCGGAGACGAAGGCAATCACGGACTCCATCCTGTTGAAAGCGTCTC
GGTTGAAAGCCGTGGATTTTCGTCATTGTAATAGAGCCTTGAATTCAGAAGCCCACTGCGTTGCAAGGCTTGTTTGTAGTTTTGATTTTGCTAGAGACCAGACGTCTTCC
CCTTTGTGGGATTCTGGGCATTTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAACACTTAAATACAAAGGAGATTGACAAGGGACTCATTCTTATGTGGAACCTATGGAAGTTTAGGAACAAAACAGAGAACTCCACATCCCTCCCAACAACAGA
TTCCTTTCAGAGAAGCATTGAAAGAGACTTCAAAGAGCTGGAAGAAAATTACCTCTCAAATCTGTCAGCCAGCAGACCTCAGAGCCAAGCGAGTCAAGGTCCGTGGTCAG
CCCCGAAGCCAAATGCCTGGAAACTGAATTCAGATGTAGCGTGGATCAAAGGAAAATCTTATGGGGGAATTGGATGGGTGGTCCATGACTCGAATCGATCCCTGATTTGT
AGCGGATCAAAGATGATTAATCGTAAGTGGCCCATAAAATCATTGGAAGCTAAAGCTATTTTGGAAGGAATCAAGTCATTTGCGGATACCTGTGTTCAGCGCCAAATCCC
TCTCAAGGTTGAGTCTGATTCTTTAGAGATCATCAAGATCTTGAATGGAGAAACGACTGATTTATCGGAGACGAAGGCAATCACGGACTCCATCCTGTTGAAAGCGTCTC
GGTTGAAAGCCGTGGATTTTCGTCATTGTAATAGAGCCTTGAATTCAGAAGCCCACTGCGTTGCAAGGCTTGTTTGTAGTTTTGATTTTGCTAGAGACCAGACGTCTTCC
CCTTTGTGGGATTCTGGGCATTTTTTGTAG
Protein sequenceShow/hide protein sequence
MVEHLNTKEIDKGLILMWNLWKFRNKTENSTSLPTTDSFQRSIERDFKELEENYLSNLSASRPQSQASQGPWSAPKPNAWKLNSDVAWIKGKSYGGIGWVVHDSNRSLIC
SGSKMINRKWPIKSLEAKAILEGIKSFADTCVQRQIPLKVESDSLEIIKILNGETTDLSETKAITDSILLKASRLKAVDFRHCNRALNSEAHCVARLVCSFDFARDQTSS
PLWDSGHFL