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Lag0006032 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006032
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:36208657..36209423
RNA-Seq ExpressionLag0006032
SyntenyLag0006032
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.2e-1738.46Show/hide
Query:  GEHTGSAQSIESAAAFASQF-QEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRT
        G+   +  SI S AA AS+       E   YV   +YR Y +   PTH+HP+  NHENFSYANNKN+L  P GF         SLED++  F+ ES +RT
Subjt:  GEHTGSAQSIESAAAFASQF-QEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRT

Query:  NKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETE---VVEKQETTELED
          LE +  AI +TV     A++N+E QL Q+ +   TM KGK P+  E +  E  KA+T+   ++     ++++ E  E++D
Subjt:  NKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETE---VVEKQETTELED

XP_024017305.1 uncharacterized protein LOC112090376 [Morus notabilis]4.2e-1641.33Show/hide
Query:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNK
        E + S +++  A+   +   E T EQVQ+V+N N+  Y  N  P H+HP   NHENFSYANN+NIL  P GF   + E K S+EDL+  FI E+  R NK
Subjt:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNK

Query:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQM
         E     I T  N  +A +K++E Q+GQL +     + GK P++ E + M
Subjt:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQM

XP_024019991.1 uncharacterized protein LOC112091203 [Morus notabilis]1.2e-1840.54Show/hide
Query:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNP-LGFAPPKQESKQSLEDLVGAFIAESSNRTNK
        E + S +++  A+   +Q  E T EQVQ+V+N N+  Y  N  P  +HP   NHENFSYANN+N+L P LGF     E K  +EDL+  FI E+  R NK
Subjt:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNP-LGFAPPKQESKQSLEDLVGAFIAESSNRTNK

Query:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEEG
         E     I T  N  +A +K++E Q+GQL +     + GK P++ E +  ++ KAIT+  EEE E  + Q     ED  KE E G
Subjt:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEEG

XP_024020480.1 uncharacterized protein LOC112091333 [Morus notabilis]7.7e-1839.46Show/hide
Query:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNK
        E + S +++  A+   +Q  E T EQVQ+V+N N+  Y  N  P H+HP   NHENFSYANN+N+L  P GF     E K S+EDL+  FI E+  R NK
Subjt:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNK

Query:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEEG
         E     I T  N  +A +K++E Q+GQL +     + GK P++ E +  ++ KAIT+   +E E  + Q     ED  +E E G
Subjt:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEEG

XP_024032903.1 uncharacterized protein LOC112095347 [Morus notabilis]7.0e-1940.66Show/hide
Query:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNK
        E + S +++  A+   +Q  E T EQVQ+V+N N+  Y  N  P H+HP   NHENFSYANN+N+L  P GF     E K S+EDL+  FI E+  R NK
Subjt:  EHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNK

Query:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQE-TTELEDLAKE
         E     I T  N  +A +K++E Q+GQL +V    + GK P++ E +  ++ KAIT+   +E E  + QE  TE E++  E
Subjt:  LEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQE-TTELEDLAKE

TrEMBL top hitse value%identityAlignment
A0A2P5A3N0 Uncharacterized protein6.2e-1339.31Show/hide
Query:  NNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKG
        + + PTH+H    NHENFSYANNKN+L  P G   P +E K SLED++  FI E+  R NK E     I T  N  +A +K++E Q+G+L +        
Subjt:  NNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKG

Query:  KAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEE
        K P++ E +  ++ KAIT+  E+E EV+ KQ T+  ++   +  E
Subjt:  KAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEE

A0A2P5B1T0 Uncharacterized protein1.9e-1441.96Show/hide
Query:  QVQYVS--NFNYRGYSN-NSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAINTTVNGHSAAIKNI
        QV Y++  NFNYRG +  N+ PTH+HP   NHENFSY NN+N+L  P G      E K SLED++  FI E+  R  K E     I    N  +A IK++
Subjt:  QVQYVS--NFNYRGYSN-NSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAINTTVNGHSAAIKNI

Query:  ETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETE
        E Q+GQL +       GK P + E +   + KAIT+   +E E
Subjt:  ETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETE

A0A2P5BPI6 Uncharacterized protein8.6e-1541.67Show/hide
Query:  YSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMN
        YSN   PTH++P   NHENFSY N +N+L  P GF PP  E K SLEDL+  FI E+  + NK E     I T  N  +A +K++E Q+GQL +      
Subjt:  YSNNSTPTHHHPSNINHENFSYANNKNILN-PLGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMN

Query:  KGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKE
         GK P++ E +  ++ KAIT+ + +E EV   +E   + D+ KE
Subjt:  KGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKE

A0A6P9DWY0 uncharacterized protein LOC1183440269.5e-1439.29Show/hide
Query:  QSIESAAAFASQF--QEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNP-LGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEA
        QS E  AA +      EA+ EQVQY++N NY  Y  N  P ++H    NHEN SY N KN+L P  GF     E K SLED + +F+ E++ R  K +  
Subjt:  QSIESAAAFASQF--QEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNP-LGFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEA

Query:  GIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQET
           I T  +   AAIKNIE Q+GQL +  +   +G  P+  E +  E  KAIT+    E +     ET
Subjt:  GIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQET

A0A6P9F5T6 uncharacterized protein LOC1089899764.3e-1436.57Show/hide
Query:  SAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNPL---GFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAI
        +A +      E + EQVQY++N+NY  Y  N  P +++P   NHEN SY N KN+L P    GF     E K SLED + +F+ E++ R  K +     I
Subjt:  SAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNPL---GFAPPKQESKQSLEDLVGAFIAESSNRTNKLEEAGIAI

Query:  NTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETT---ELEDLAK
         T  +   A IKN+E Q+GQL    ++  +G  P+  E +  E YKAIT+    E E    +ET    +L+ +AK
Subjt:  NTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETT---ELEDLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCTGCAGGTGGTACTTTTTGTCCAAGACCGTGGAGAACATACAGGGAGTGCTCAATCGATCGAGTCTGCAGCTGCCTTTGCATCTCAGTTTCAAGAGGCGACTTT
CGAACAGGTTCAATATGTTTCTAATTTTAATTATAGGGGATATAGTAATAATTCTACACCTACACATCATCACCCTAGCAATATAAATCATGAGAACTTCTCGTATGCTA
ATAATAAAAATATTTTAAATCCTCTTGGTTTTGCCCCTCCTAAGCAAGAAAGTAAACAATCGTTAGAGGATCTAGTTGGAGCTTTCATTGCAGAATCTAGCAACAGGACG
AACAAGCTTGAGGAGGCTGGGATCGCTATAAACACCACGGTAAATGGCCATAGTGCAGCAATAAAGAACATCGAAACTCAGCTAGGACAATTGGTAAGTGTTGGTAGTAC
CATGAACAAGGGTAAAGCTCCAGCTGAACAGGAGAAATCTCAGATGGAGTACTACAAGGCTATCACGGTGCATCATGAGGAGGAAACTGAAGTAGTTGAGAAGCAAGAGA
CTACTGAGTTAGAGGATCTCGCTAAAGAAGCTGAAGAGGGCATGTTGGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGCTGCAGGTGGTACTTTTTGTCCAAGACCGTGGAGAACATACAGGGAGTGCTCAATCGATCGAGTCTGCAGCTGCCTTTGCATCTCAGTTTCAAGAGGCGACTTT
CGAACAGGTTCAATATGTTTCTAATTTTAATTATAGGGGATATAGTAATAATTCTACACCTACACATCATCACCCTAGCAATATAAATCATGAGAACTTCTCGTATGCTA
ATAATAAAAATATTTTAAATCCTCTTGGTTTTGCCCCTCCTAAGCAAGAAAGTAAACAATCGTTAGAGGATCTAGTTGGAGCTTTCATTGCAGAATCTAGCAACAGGACG
AACAAGCTTGAGGAGGCTGGGATCGCTATAAACACCACGGTAAATGGCCATAGTGCAGCAATAAAGAACATCGAAACTCAGCTAGGACAATTGGTAAGTGTTGGTAGTAC
CATGAACAAGGGTAAAGCTCCAGCTGAACAGGAGAAATCTCAGATGGAGTACTACAAGGCTATCACGGTGCATCATGAGGAGGAAACTGAAGTAGTTGAGAAGCAAGAGA
CTACTGAGTTAGAGGATCTCGCTAAAGAAGCTGAAGAGGGCATGTTGGGCTCCTAG
Protein sequenceShow/hide protein sequence
MQLQVVLFVQDRGEHTGSAQSIESAAAFASQFQEATFEQVQYVSNFNYRGYSNNSTPTHHHPSNINHENFSYANNKNILNPLGFAPPKQESKQSLEDLVGAFIAESSNRT
NKLEEAGIAINTTVNGHSAAIKNIETQLGQLVSVGSTMNKGKAPAEQEKSQMEYYKAITVHHEEETEVVEKQETTELEDLAKEAEEGMLGS