; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006033 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006033
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:36217656..36218669
RNA-Seq ExpressionLag0006033
SyntenyLag0006033
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]8.4e-3539.46Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN
        MV AE R+PQ+EKLALA VTS  RLRPYF+AHK+ VLTNFPL+QVLQK D SGRL+K    +  +    +P  A                EP  Y+    
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN

Query:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTS---------SSDGDL---------QTELSRAV--
        ++   E  + WTL++DGSSN +GCGA +LL SPD+ +FEYALRFNF ASNNE+EYE LL  L+             SD  L         Q   SR    
Subjt:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTS---------SSDGDL---------QTELSRAV--

Query:  LVEVLSEPIICIKDILETGGQAPMVEVEDLVAEAEV----------------PMI-GEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL
        L +V ++     K  +    +A  V  + L   A                  P I  ++A+ I+ +  P   E +W  LLI YL+ G LP E++EA++L
Subjt:  LVEVLSEPIICIKDILETGGQAPMVEVEDLVAEAEV----------------PMI-GEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL

XP_022155870.1 uncharacterized protein LOC111022883 [Momordica charantia]1.7e-3539.84Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW
        M  AETR+PQ+EKLALA VTS RRLRPYF+AH V VLTN PLK +  K + SGRLMK    +  +  Q  P   L+ +A     A         E+  +W
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW

Query:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTSSSDGDLQTELSRAVLVEVLSEPIICIKDILETGGQAPMVEVEDLV
        T+++DGSSN +GCGAGILL +P   +FEYALRFNF+ SNNE+EYE LL             +T+L+R+V VE+L  P I   D+++    +P        
Subjt:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTSSSDGDLQTELSRAVLVEVLSEPIICIKDILETGGQAPMVEVEDLV

Query:  AEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL
                                  SWMD +++++ KG  P +  E +K+
Subjt:  AEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]4.2e-3451.53Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN
        MV AE R+P +EKLALA VTS RRLRPYF+AHK+ VLTNFPL+Q+LQK D SGRL+K    +  +    +P  A                EP  Y+    
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN

Query:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR
        ++   E  + WTL++DGSSN +GCGAG+LL SPD+ +FEY LRFNF ASNN++EYE LL  L+
Subjt:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]2.7e-3350.92Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN
        MV AE R+P +EKLALA VTS RRLRPYF+AHK+ VL NFPL+Q+LQK + SGRL+K    ++ +    +P  A                EP  Y+    
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN

Query:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR
        ++   E  + WTL++DGSSN +GCGAG+LL SPD+ +FEYAL+FNF ASNNE EYE LL  L+
Subjt:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR

XP_022158860.1 uncharacterized protein LOC111025322 [Momordica charantia]7.9e-3336.52Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW
        M   ETR+PQ+EKLALA VTSTRRLRPYF+AH V VLTN PLK +  K + SGRLMK    +  +  Q  P   L+ +A     A      +L      W
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW

Query:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFT-------------------------SSSDGDLQTELS--RAVLVEV
        T+++DGSSN +GCGAGILL +P   +FEYALRF+F+ SNNE+EYE LLT LR                            + D  ++  LS  R+ L++ 
Subjt:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFT-------------------------SSSDGDLQTELS--RAVLVEV

Query:  LSEPIICIKDILETGGQA----PMVEVEDLVAEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL
         +  +  +     +   A     +    DL     V ++   ++           E SWMD ++D++ KG  P +  E KK+
Subjt:  LSEPIICIKDILETGGQA----PMVEVEDLVAEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H4.1e-3539.46Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN
        MV AE R+PQ+EKLALA VTS  RLRPYF+AHK+ VLTNFPL+QVLQK D SGRL+K    +  +    +P  A                EP  Y+    
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN

Query:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTS---------SSDGDL---------QTELSRAV--
        ++   E  + WTL++DGSSN +GCGA +LL SPD+ +FEYALRFNF ASNNE+EYE LL  L+             SD  L         Q   SR    
Subjt:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTS---------SSDGDL---------QTELSRAV--

Query:  LVEVLSEPIICIKDILETGGQAPMVEVEDLVAEAEV----------------PMI-GEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL
        L +V ++     K  +    +A  V  + L   A                  P I  ++A+ I+ +  P   E +W  LLI YL+ G LP E++EA++L
Subjt:  LVEVLSEPIICIKDILETGGQAPMVEVEDLVAEAEV----------------PMI-GEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL

A0A6J1DNL8 uncharacterized protein LOC1110228838.2e-3639.84Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW
        M  AETR+PQ+EKLALA VTS RRLRPYF+AH V VLTN PLK +  K + SGRLMK    +  +  Q  P   L+ +A     A         E+  +W
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW

Query:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTSSSDGDLQTELSRAVLVEVLSEPIICIKDILETGGQAPMVEVEDLV
        T+++DGSSN +GCGAGILL +P   +FEYALRFNF+ SNNE+EYE LL             +T+L+R+V VE+L  P I   D+++    +P        
Subjt:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTSSSDGDLQTELSRAVLVEVLSEPIICIKDILETGGQAPMVEVEDLV

Query:  AEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL
                                  SWMD +++++ KG  P +  E +K+
Subjt:  AEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL

A0A6J1DVC6 Ribonuclease H2.0e-3451.53Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN
        MV AE R+P +EKLALA VTS RRLRPYF+AHK+ VLTNFPL+Q+LQK D SGRL+K    +  +    +P  A                EP  Y+    
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN

Query:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR
        ++   E  + WTL++DGSSN +GCGAG+LL SPD+ +FEY LRFNF ASNN++EYE LL  L+
Subjt:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR

A0A6J1DX12 uncharacterized protein LOC1110253223.8e-3336.52Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW
        M   ETR+PQ+EKLALA VTSTRRLRPYF+AH V VLTN PLK +  K + SGRLMK    +  +  Q  P   L+ +A     A      +L      W
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRP---LEARAEPSKYAATVNLLDLGEARKTW

Query:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFT-------------------------SSSDGDLQTELS--RAVLVEV
        T+++DGSSN +GCGAGILL +P   +FEYALRF+F+ SNNE+EYE LLT LR                            + D  ++  LS  R+ L++ 
Subjt:  TLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFT-------------------------SSSDGDLQTELS--RAVLVEV

Query:  LSEPIICIKDILETGGQA----PMVEVEDLVAEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL
         +  +  +     +   A     +    DL     V ++   ++           E SWMD ++D++ KG  P +  E KK+
Subjt:  LSEPIICIKDILETGGQA----PMVEVEDLVAEAEVPMIGEDALTIEAEPSPAARETSWMDLLIDYLEKGELPAERMEAKKL

A0A6J1DZU0 Ribonuclease H1.3e-3350.92Show/hide
Query:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN
        MV AE R+P +EKLALA VTS RRLRPYF+AHK+ VL NFPL+Q+LQK + SGRL+K    ++ +    +P  A                EP  Y+    
Subjt:  MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMK----IDSFRDQGRPLEAR--------------AEPSKYAATVN

Query:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR
        ++   E  + WTL++DGSSN +GCGAG+LL SPD+ +FEYAL+FNF ASNNE EYE LL  L+
Subjt:  LLDLGEARKTWTLFIDGSSNTKGCGAGILLESPDRGKFEYALRFNFKASNNESEYEVLLTRLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAGCAGAAACAAGACACCCTCAAGTGGAGAAGCTCGCCTTAGCCTTTGTTACGTCGACCAGGAGGTTGCGACCATACTTCGAAGCCCACAAGGTAACTGTTTT
GACCAATTTCCCTTTAAAGCAGGTACTGCAGAAATTGGATGCCTCGGGTCGTCTCATGAAAATTGACAGCTTCCGAGACCAAGGCCGACCCTTAGAGGCTCGAGCCGAGC
CGAGCAAGTATGCGGCAACAGTCAATTTACTTGATTTAGGAGAGGCAAGAAAAACTTGGACACTCTTTATTGATGGATCTTCTAACACCAAAGGTTGTGGGGCAGGGATT
TTGCTGGAATCCCCTGATAGAGGGAAATTTGAATATGCCCTGAGGTTTAACTTCAAGGCCTCAAATAATGAATCAGAGTATGAGGTGCTCCTCACAAGATTGAGATTCAC
TAGCTCGTCTGACGGTGACCTACAAACAGAGTTGAGTAGGGCAGTTCTAGTTGAGGTTTTATCTGAACCCATAATATGCATTAAAGACATTCTTGAAACAGGTGGTCAAG
CTCCCATGGTCGAGGTCGAGGATCTAGTTGCCGAGGCCGAGGTTCCCATGATTGGGGAGGATGCCCTGACAATTGAAGCTGAACCTTCCCCAGCAGCGAGAGAGACCTCG
TGGATGGATCTGCTCATTGACTATTTGGAAAAAGGTGAGCTGCCAGCGGAAAGGATGGAGGCTAAGAAACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAGCAGAAACAAGACACCCTCAAGTGGAGAAGCTCGCCTTAGCCTTTGTTACGTCGACCAGGAGGTTGCGACCATACTTCGAAGCCCACAAGGTAACTGTTTT
GACCAATTTCCCTTTAAAGCAGGTACTGCAGAAATTGGATGCCTCGGGTCGTCTCATGAAAATTGACAGCTTCCGAGACCAAGGCCGACCCTTAGAGGCTCGAGCCGAGC
CGAGCAAGTATGCGGCAACAGTCAATTTACTTGATTTAGGAGAGGCAAGAAAAACTTGGACACTCTTTATTGATGGATCTTCTAACACCAAAGGTTGTGGGGCAGGGATT
TTGCTGGAATCCCCTGATAGAGGGAAATTTGAATATGCCCTGAGGTTTAACTTCAAGGCCTCAAATAATGAATCAGAGTATGAGGTGCTCCTCACAAGATTGAGATTCAC
TAGCTCGTCTGACGGTGACCTACAAACAGAGTTGAGTAGGGCAGTTCTAGTTGAGGTTTTATCTGAACCCATAATATGCATTAAAGACATTCTTGAAACAGGTGGTCAAG
CTCCCATGGTCGAGGTCGAGGATCTAGTTGCCGAGGCCGAGGTTCCCATGATTGGGGAGGATGCCCTGACAATTGAAGCTGAACCTTCCCCAGCAGCGAGAGAGACCTCG
TGGATGGATCTGCTCATTGACTATTTGGAAAAAGGTGAGCTGCCAGCGGAAAGGATGGAGGCTAAGAAACTGTAG
Protein sequenceShow/hide protein sequence
MVGAETRHPQVEKLALAFVTSTRRLRPYFEAHKVTVLTNFPLKQVLQKLDASGRLMKIDSFRDQGRPLEARAEPSKYAATVNLLDLGEARKTWTLFIDGSSNTKGCGAGI
LLESPDRGKFEYALRFNFKASNNESEYEVLLTRLRFTSSSDGDLQTELSRAVLVEVLSEPIICIKDILETGGQAPMVEVEDLVAEAEVPMIGEDALTIEAEPSPAARETS
WMDLLIDYLEKGELPAERMEAKKL