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Lag0006037 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006037
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:36360508..36361196
RNA-Seq ExpressionLag0006037
SyntenyLag0006037
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7838458.1 reverse transcriptase [Senna tora]6.1e-1230.73Show/hide
Query:  IDITCPCCFNFPEYTDHSLFECSRAKEIWRI-TCNKVFLESDFNGNIADRWLK------------IGSSCAQKDLELIAITSNSRKLSSPPSSSLPSTSI
        ++I CP C    E  DH    C   +++W +   N   L+S   G+   +WLK            +G     K +E + + S        P  ++ +  I
Subjt:  IDITCPCCFNFPEYTDHSLFECSRAKEIWRI-TCNKVFLESDFNGNIADRWLK------------IGSSCAQKDLELIAITSNSRKLSSPPSSSLPSTSI

Query:  KFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPA--AELEAIKEGINLALSLGCDSLLVESDNQLAINFLN
          W PPP+ +WK+N D    ++   +G   I+R  N + +    +FL    EG    AEL AI EG+NLA  L CD L+VESD+  A+N +N
Subjt:  KFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPA--AELEAIKEGINLALSLGCDSLLVESDNQLAINFLN

OMP06477.1 hypothetical protein CCACVL1_01552 [Corchorus capsularis]7.4e-1026.29Show/hide
Query:  MDIDITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFL---ESDFNGNIADRWLKIGSSCAQKD---LELIAITSNSRKLSSPPSSSLPSTSIK----
        M+I  TC  C        H  F C  +K +W   C  V     + D NGN  + +L+   +  Q D     L  +  NS +       S+P+  ++    
Subjt:  MDIDITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFL---ESDFNGNIADRWLKIGSSCAQKD---LELIAITSNSRKLSSPPSSSLPSTSIK----

Query:  -----------------------FWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLV
                                W PPP+   K+N DA + + + E G+  ++R    +++ + SR L    +   AE+ AI  G  +AL LG D  +V
Subjt:  -----------------------FWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLV

Query:  ESDNQLAINFLNR
        ESD+ LAI  +N+
Subjt:  ESDNQLAINFLNR

ONI15824.1 hypothetical protein PRUPE_3G063400 [Prunus persica]8.8e-1128.65Show/hide
Query:  DITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLEL----IAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNF
        D  CP C    E   H ++ C  A+++W+    KV     F G     +     +C++K+  +    + +T     L    S+ +   + K WS PPV  
Subjt:  DITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLEL----IAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNF

Query:  WKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSEN
        +K+NVDA ++  +   GI A++R    +++ A++  L+ +     AE+ A++ G+N A   G  S+LVESD+Q  +N LN   E+
Subjt:  WKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSEN

XP_024033483.1 uncharacterized protein LOC112095606 [Citrus clementina]5.7e-1028.57Show/hide
Query:  HSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDL--ELIAITSNSRKLSSPPSSSLPSTSI---KFWSPPPVNFWKVNVDAVWLSSSL
        H+L EC  A++IW++T     LE+D      +  L  G     + L  +  A+    +++  P  + + S  +   + W+PP   F KVNVDA   S   
Subjt:  HSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDL--ELIAITSNSRKLSSPPSSSLPSTSI---KFWSPPPVNFWKVNVDAVWLSSSL

Query:  ELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRK
          G+ AI+R    +++ A+ +      +   AE EA++ G+ +A +    +L+VESD Q  +N +N K
Subjt:  ELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRK

XP_038687446.1 uncharacterized protein LOC119986824 [Tripterygium wilfordii]1.3e-1435.05Show/hide
Query:  CPCCFNFP--EYTDHSLFECSRAKEIW----RITCNKVFLESDFNGNIADRWLKIGSSCAQKDLELIAITSNSRKLSSPP--SSSLPSTSIKFWSPPPVN
        C CC NFP  E  +H L E S A ++W    ++T  ++       G I D+ +++   C  K L +    SN  KL   P  +SS    SI +W+PPP +
Subjt:  CPCCFNFP--EYTDHSLFECSRAKEIW----RITCNKVFLESDFNGNIADRWLKIGSSCAQKDLELIAITSNSRKLSSPP--SSSLPSTSIKFWSPPPVN

Query:  FWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSE---NVVYFR
           +N D   L++  + G   ++RR +   V A S F   S     AE+ AI EGINLA SLG  +LLVESD+ + IN L+       N++Y +
Subjt:  FWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSE---NVVYFR

TrEMBL top hitse value%identityAlignment
A0A1R3KHA2 Uncharacterized protein3.6e-1026.29Show/hide
Query:  MDIDITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFL---ESDFNGNIADRWLKIGSSCAQKD---LELIAITSNSRKLSSPPSSSLPSTSIK----
        M+I  TC  C        H  F C  +K +W   C  V     + D NGN  + +L+   +  Q D     L  +  NS +       S+P+  ++    
Subjt:  MDIDITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFL---ESDFNGNIADRWLKIGSSCAQKD---LELIAITSNSRKLSSPPSSSLPSTSIK----

Query:  -----------------------FWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLV
                                W PPP+   K+N DA + + + E G+  ++R    +++ + SR L    +   AE+ AI  G  +AL LG D  +V
Subjt:  -----------------------FWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLV

Query:  ESDNQLAINFLNR
        ESD+ LAI  +N+
Subjt:  ESDNQLAINFLNR

A0A1U8MRM8 uncharacterized protein LOC1078956341.8e-0937.61Show/hide
Query:  PSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLN
        PS   P+ +IK W  PP  + KVNVDAV ++ S  LG   I R  +  ++G   +F++ +L+   AELEA+K+G++LA  L    L+VESD+   +N +N
Subjt:  PSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLN

Query:  RKSENVVYF
        ++++++  F
Subjt:  RKSENVVYF

A0A2P6S9C4 Putative ribonuclease H-like domain-containing protein3.6e-1033.54Show/hide
Query:  YTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLELIAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLEL
        YT H +F       IW+  CN VF       +I+   L + S   +   E + I +        P +S  ST    W PPP++ WK+N DA W SS+L  
Subjt:  YTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLELIAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLEL

Query:  GIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAIN
        G+ A+LR     +V   S+ LN +    AAE  AI  G++LA S+   S  +ESD+ + I+
Subjt:  GIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAIN

A0A6P4MAJ5 uncharacterized protein LOC1084551831.0e-0936.7Show/hide
Query:  PSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLN
        P+   P+ +IK W  PP  + KVNVDA  ++ S   G+ AI R  +  ++G   +F++ +++   AELEA+KEG+NLA  L    L+VESD+   +N +N
Subjt:  PSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLN

Query:  RKSENVVYF
        ++++++  F
Subjt:  RKSENVVYF

M5X848 Uncharacterized protein4.2e-1128.65Show/hide
Query:  DITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLEL----IAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNF
        D  CP C    E   H ++ C  A+++W+    KV     F G     +     +C++K+  +    + +T     L    S+ +   + K WS PPV  
Subjt:  DITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLEL----IAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNF

Query:  WKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSEN
        +K+NVDA ++  +   GI A++R    +++ A++  L+ +     AE+ A++ G+N A   G  S+LVESD+Q  +N LN   E+
Subjt:  WKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0530.68Show/hide
Query:  WSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLN
        W  PP  + K N DA W   +   GI  ILR  +  ++   +R L  +     AELEA++  +          ++ ESD Q  +N LN
Subjt:  WSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLN

AT4G29090.1 Ribonuclease H-like superfamily protein1.1e-0624.42Show/hide
Query:  ITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESD------------FN-GNIADRWLKIGSSC-----------------------------AQK
        I CP C    E  +H LF+C+ A+  W I+   + L  +            FN GN   +W K                                  A+ 
Subjt:  ITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESD------------FN-GNIADRWLKIGSSC-----------------------------AQK

Query:  DLELIAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGC
        DLE   I + +    + P   +  +S   W PPP  + K N DA W   +   GI  +LR    ++    +R L        AELEA++  +        
Subjt:  DLELIAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNFWKVNVDAVWLSSSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGC

Query:  DSLLVESDNQLAINFLN
        + ++ ESD+Q+ I  LN
Subjt:  DSLLVESDNQLAINFLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATTGATATCACATGTCCTTGTTGTTTCAATTTCCCTGAATATACTGACCATTCTCTTTTTGAATGTTCTCGTGCTAAGGAGATTTGGAGAATTACTTGCAACAA
AGTCTTCCTCGAGTCTGATTTCAATGGAAACATCGCAGATCGTTGGTTGAAGATCGGTTCCTCCTGCGCCCAGAAGGATCTGGAGCTTATTGCCATCACTTCAAATTCGA
GGAAGCTATCTAGCCCTCCTTCTTCTTCCCTACCATCCACCTCGATCAAATTCTGGTCTCCTCCCCCGGTGAATTTCTGGAAAGTCAATGTTGATGCGGTATGGCTCTCT
TCCTCCCTTGAGCTAGGTATCGAAGCCATTCTCAGAAGGCCAAACAATGATATTGTGGGTGCTTCCTCGCGGTTTCTCAACATCTCCCTCGAAGGTCCAGCTGCTGAACT
CGAAGCCATCAAAGAAGGCATCAATCTGGCCCTCTCCCTAGGATGTGATAGTCTCCTAGTGGAATCTGACAACCAATTGGCCATCAATTTTCTAAACAGAAAATCTGAAA
ATGTGGTGTACTTTAGAAGGCCTTCTCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATTGATATCACATGTCCTTGTTGTTTCAATTTCCCTGAATATACTGACCATTCTCTTTTTGAATGTTCTCGTGCTAAGGAGATTTGGAGAATTACTTGCAACAA
AGTCTTCCTCGAGTCTGATTTCAATGGAAACATCGCAGATCGTTGGTTGAAGATCGGTTCCTCCTGCGCCCAGAAGGATCTGGAGCTTATTGCCATCACTTCAAATTCGA
GGAAGCTATCTAGCCCTCCTTCTTCTTCCCTACCATCCACCTCGATCAAATTCTGGTCTCCTCCCCCGGTGAATTTCTGGAAAGTCAATGTTGATGCGGTATGGCTCTCT
TCCTCCCTTGAGCTAGGTATCGAAGCCATTCTCAGAAGGCCAAACAATGATATTGTGGGTGCTTCCTCGCGGTTTCTCAACATCTCCCTCGAAGGTCCAGCTGCTGAACT
CGAAGCCATCAAAGAAGGCATCAATCTGGCCCTCTCCCTAGGATGTGATAGTCTCCTAGTGGAATCTGACAACCAATTGGCCATCAATTTTCTAAACAGAAAATCTGAAA
ATGTGGTGTACTTTAGAAGGCCTTCTCTGTAG
Protein sequenceShow/hide protein sequence
MDIDITCPCCFNFPEYTDHSLFECSRAKEIWRITCNKVFLESDFNGNIADRWLKIGSSCAQKDLELIAITSNSRKLSSPPSSSLPSTSIKFWSPPPVNFWKVNVDAVWLS
SSLELGIEAILRRPNNDIVGASSRFLNISLEGPAAELEAIKEGINLALSLGCDSLLVESDNQLAINFLNRKSENVVYFRRPSL