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Lag0006050 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006050
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr6:36653584..36655762
RNA-Seq ExpressionLag0006050
SyntenyLag0006050
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO96175.1 Retrotransposon gag protein [Corchorus capsularis]6.4e-0841.46Show/hide
Query:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM
        D L  FR+VKVNIP+L+A+ +IP+Y +FLK     K +  GK     NV  +L   LP KC DPG      S+   +  N M
Subjt:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM

XP_015385876.1 uncharacterized protein LOC107177106 [Citrus sinensis]2.2e-0852.24Show/hide
Query:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL
        L  FR+V+VNIPLL+A+ ++P Y +FLK     K K SG E+VS  ENV  +L  +LP KC DPGP+
Subjt:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL

XP_024038241.1 uncharacterized protein LOC112097289 [Citrus clementina]2.2e-0852.24Show/hide
Query:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL
        L  FR+V+VNIPLL+A+ ++P Y +FLK     K K SG E+VS  ENV  +L  +LP KC DPGP+
Subjt:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL

XP_024042783.1 uncharacterized protein LOC112099602 [Citrus clementina]6.4e-0850.75Show/hide
Query:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL
        L  FR+V+VNIPLL+A+ ++P Y +F K     K K SG E+VS  ENV  +L  +LP KC DPGP+
Subjt:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL

XP_024955632.1 uncharacterized protein LOC112498603 [Citrus sinensis]2.2e-0852.24Show/hide
Query:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL
        L  FR+V+VNIPLL+A+ ++P Y +FLK     K K SG E+VS  ENV  +L  +LP KC DPGP+
Subjt:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVS--ENVIVLLPNELPKKCLDPGPL

TrEMBL top hitse value%identityAlignment
A0A1R3GM81 Retrotransposon gag protein9.0e-0839.02Show/hide
Query:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM
        D L  FR++++NIPLL+A+ +IP+Y +FLK     K +  GK     NV  +L   LP KC DPG      S+   +  N M
Subjt:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM

A0A1R3JMW9 Retrotransposon gag protein3.1e-0841.46Show/hide
Query:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM
        D L  FR+VKVNIP+L+A+ +IP+Y +FLK     K +  GK     NV  +L   LP KC DPG      S+   +  N M
Subjt:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM

A0A1R3K5E5 Retrotransposon gag protein2.0e-0741.46Show/hide
Query:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM
        D L  FR+V+VNIPLL+A+ ++P YV  LK +   K    GK  V   V  +L   LP KC DPG      S+ N + +N M
Subjt:  DDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPKKCLDPGPLGSLASLRNKLWNNMM

A0A6P6TXW8 uncharacterized protein LOC1137049289.0e-0850.75Show/hide
Query:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEE--VSENVIVLLPNELPKKCLDPGPL
        L AFR+++VNIPLL+A+ ++P Y +FLK     K K  G E   V ENV  +L  +LP KC DPGPL
Subjt:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEE--VSENVIVLLPNELPKKCLDPGPL

A0A6P6WXZ3 uncharacterized protein LOC1137355112.0e-0752.31Show/hide
Query:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEV--SENVIVLLPNELPKKCLDPG
        L  FR+V+VNIPLL+A+ +IP Y +FLK    GK K  G E+V   ENV  +L  +LP KC DPG
Subjt:  LVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEV--SENVIVLLPNELPKKCLDPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTGGGACGATATGCTAGGAACTAGAGACCTTACAACCCAAGGTGGCAAGACCATCCCAATTTCAACTACAGGAACCAGCAAAAACCTCTCGTGTTTAAACGCAAT
CAGGCATATAGCTCATCTTCATGACAGTGTTTCCACCTTCTTAGATGATTTGGTGGCTTTCAGGAGGGTGAAGGTCAACATTCCATTACTTGAGGCAGTACTTGAAATTC
CATCCTATGTTGAGTTTCTCAAGACTTGGTACGAAGGTAAAGTGAAGTCCTCGGGTAAAGAAGAGGTTAGTGAAAATGTCATTGTGCTATTGCCCAATGAGTTGCCTAAG
AAATGCCTTGATCCTGGTCCATTAGGTTCCCTTGCTAGCTTAAGGAACAAACTTTGGAACAATATGATGGAAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTGGGACGATATGCTAGGAACTAGAGACCTTACAACCCAAGGTGGCAAGACCATCCCAATTTCAACTACAGGAACCAGCAAAAACCTCTCGTGTTTAAACGCAAT
CAGGCATATAGCTCATCTTCATGACAGTGTTTCCACCTTCTTAGATGATTTGGTGGCTTTCAGGAGGGTGAAGGTCAACATTCCATTACTTGAGGCAGTACTTGAAATTC
CATCCTATGTTGAGTTTCTCAAGACTTGGTACGAAGGTAAAGTGAAGTCCTCGGGTAAAGAAGAGGTTAGTGAAAATGTCATTGTGCTATTGCCCAATGAGTTGCCTAAG
AAATGCCTTGATCCTGGTCCATTAGGTTCCCTTGCTAGCTTAAGGAACAAACTTTGGAACAATATGATGGAAAGAATTTGA
Protein sequenceShow/hide protein sequence
MLWDDMLGTRDLTTQGGKTIPISTTGTSKNLSCLNAIRHIAHLHDSVSTFLDDLVAFRRVKVNIPLLEAVLEIPSYVEFLKTWYEGKVKSSGKEEVSENVIVLLPNELPK
KCLDPGPLGSLASLRNKLWNNMMERI