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Lag0006059 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006059
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr6:36738659..36740218
RNA-Seq ExpressionLag0006059
SyntenyLag0006059
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051992.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa]6.4e-2142.18Show/hide
Query:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSMQ--------------------HLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIP
        V++M+    + +  N  D++++ F       +R+QI + RSM+                    +L  K ++S  YLNSTLSS Y  +I+PLG+   W IP
Subjt:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSMQ--------------------HLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIP

Query:  DDIKKYISSPPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNK
        DDI   +  PPNVKR+VGRPKK +I S++EFKRRVK GRCGR+GHN+
Subjt:  DDIKKYISSPPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNK

RYE26039.1 hypothetical protein EOP45_04255 [Sphingobacteriaceae bacterium]1.4e-1543.24Show/hide
Query:  FELSIFIRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQME--FKRRVKFGRCGR
        F+   FI          ++ ++++YISN+Y      S Y G+IHP+G+E SW+ P+++ + I +PP+V  R+ GRPKK RIPSQ E    RR K  RCG 
Subjt:  FELSIFIRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQME--FKRRVKFGRCGR

Query:  IGHNKKTCRFA
        +GHN+ TCR A
Subjt:  IGHNKKTCRFA

VFQ59849.1 unnamed protein product [Cuscuta campestris]1.3e-1343Show/hide
Query:  IRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTC
        + + IA  R    LS  +YIS+FY  ++  + Y G+IHP+ ++ SW +PD++ + I  PP+  KR  GRPKK RIPS+ E  +R    RC   GHN+KTC
Subjt:  IRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTC

VFQ82737.1 unnamed protein product [Cuscuta campestris]9.0e-1543.48Show/hide
Query:  NDSENYMDFELSIFI-RDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRV
        N S    +F+L  F+    +A  RS + LS  +YIS+FY  ++  +IY G+IHP+ ++ SW +PDD+   I  PP+  KR  GRPKK RIPS+ E  +R 
Subjt:  NDSENYMDFELSIFI-RDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRV

Query:  KFGRCGRIGHNKKTC
           RC   GHN+KTC
Subjt:  KFGRCGRIGHNKKTC

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]8.7e-2645.58Show/hide
Query:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSM-----------QHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISS
        VV+M+    +   +N +DF+++ F       + +QI+  R+M           +HL  K Y+S++Y N+ LSS Y G IHPLG++SSW+IP+D+K     
Subjt:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSM-----------QHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISS

Query:  PPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTCRFAPTQ
         PNVKR  GRPKK RIPS +EFK+RVK  RCGR GHN+K+C+F+ TQ
Subjt:  PPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTCRFAPTQ

TrEMBL top hitse value%identityAlignment
A0A484KAB1 Uncharacterized protein6.3e-1443Show/hide
Query:  IRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTC
        + + IA  R    LS  +YIS+FY  ++  + Y G+IHP+ ++ SW +PD++ + I  PP+  KR  GRPKK RIPS+ E  +R    RC   GHN+KTC
Subjt:  IRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTC

A0A484M2B2 SWIM-type domain-containing protein4.4e-1543.48Show/hide
Query:  NDSENYMDFELSIFI-RDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRV
        N S    +F+L  F+    +A  RS + LS  +YIS+FY  ++  +IY G+IHP+ ++ SW +PDD+   I  PP+  KR  GRPKK RIPS+ E  +R 
Subjt:  NDSENYMDFELSIFI-RDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQMEFKRRV

Query:  KFGRCGRIGHNKKTC
           RC   GHN+KTC
Subjt:  KFGRCGRIGHNKKTC

A0A4Q3F181 SWIM-type domain-containing protein6.7e-1643.24Show/hide
Query:  FELSIFIRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQME--FKRRVKFGRCGR
        F+   FI          ++ ++++YISN+Y      S Y G+IHP+G+E SW+ P+++ + I +PP+V  R+ GRPKK RIPSQ E    RR K  RCG 
Subjt:  FELSIFIRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNV-KRSVGRPKKTRIPSQME--FKRRVKFGRCGR

Query:  IGHNKKTCRFA
        +GHN+ TCR A
Subjt:  IGHNKKTCRFA

A0A5D3C2C0 Protein FAR1-RELATED SEQUENCE 3-like3.1e-2142.18Show/hide
Query:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSMQ--------------------HLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIP
        V++M+    + +  N  D++++ F       +R+QI + RSM+                    +L  K ++S  YLNSTLSS Y  +I+PLG+   W IP
Subjt:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSMQ--------------------HLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIP

Query:  DDIKKYISSPPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNK
        DDI   +  PPNVKR+VGRPKK +I S++EFKRRVK GRCGR+GHN+
Subjt:  DDIKKYISSPPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNK

A0A6J1DNQ8 uncharacterized protein LOC1110223474.2e-2645.58Show/hide
Query:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSM-----------QHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISS
        VV+M+    +   +N +DF+++ F       + +QI+  R+M           +HL  K Y+S++Y N+ LSS Y G IHPLG++SSW+IP+D+K     
Subjt:  VVQMLHDGHWNDSENYMDFELSIF-------IRDQIAMGRSM-----------QHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISS

Query:  PPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTCRFAPTQ
         PNVKR  GRPKK RIPS +EFK+RVK  RCGR GHN+K+C+F+ TQ
Subjt:  PPNVKRSVGRPKKTRIPSQMEFKRRVKFGRCGRIGHNKKTCRFAPTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGCGTAGTTGTTCAAATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTACATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCG
TTCGATGCAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACTGTGGTCTAATCCATCCATTAGGCAATGAGTCTAGTT
GGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACAGATGGAGTTCAAAAGA
CGGGTTAAATTTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGCGTAGTTGTTCAAATGCTGCACGATGGTCATTGGAACGATAGTGAGAATTACATGGACTTTGAACTCTCGATATTTATAAGAGATCAAATTGCAATGGGTCG
TTCGATGCAGCACTTGTCTATGAAGGAGTATATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACTGTGGTCTAATCCATCCATTAGGCAATGAGTCTAGTT
GGCATATCCCCGATGACATAAAAAAATATATCAGTTCTCCCCCAAACGTTAAGCGTTCCGTTGGTAGGCCAAAGAAGACCAGAATCCCCTCACAGATGGAGTTCAAAAGA
CGGGTTAAATTTGGTCGTTGTGGCAGGATTGGGCATAATAAGAAGACTTGCAGATTTGCACCAACTCAATAG
Protein sequenceShow/hide protein sequence
MGSVVVQMLHDGHWNDSENYMDFELSIFIRDQIAMGRSMQHLSMKEYISNFYLNSTLSSIYCGLIHPLGNESSWHIPDDIKKYISSPPNVKRSVGRPKKTRIPSQMEFKR
RVKFGRCGRIGHNKKTCRFAPTQ