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Lag0006076 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006076
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:36973445..36974069
RNA-Seq ExpressionLag0006076
SyntenyLag0006076
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO99000.1 reverse transcriptase [Corchorus capsularis]4.2e-1134.35Show/hide
Query:  PVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQI------------------IGA---------------WMVAGDLNAITKESKKDGGR
        P  +   ++WN R  GNPR  RAL+ L++++ PNV+FL+E K                    +GA               W   GD N I  + +KDGGR
Subjt:  PVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQI------------------IGA---------------WMVAGDLNAITKESKKDGGR

Query:  VFNFSQSRDFVNALNDCALKDLGYTGNRFTW
        +    Q  DF +AL DC L+D+G+ G+ FTW
Subjt:  VFNFSQSRDFVNALNDCALKDLGYTGNRFTW

XP_021855317.1 uncharacterized protein LOC110794658 [Spinacia oleracea]2.1e-1050Show/hide
Query:  AWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFIRK
        +W++ GDLN +T +S+K GGR F  SQ RDF N  ++  L DLGY+GN FTW N + GV  I++
Subjt:  AWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFIRK

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]1.4e-1135.83Show/hide
Query:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK-----------------QIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLG
        ++WNA   GNP+ FR LK LV++++P V+FL+E +                  +     + GD N I  +S K GG + N SQ   F N L+ C L+DL 
Subjt:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK-----------------QIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLG

Query:  YTGNRFTWMNKQPGVAFIRK
        Y G+RFTW+  +  V  I++
Subjt:  YTGNRFTWMNKQPGVAFIRK

XP_031375777.1 uncharacterized protein LOC116190250 [Punica granatum]1.6e-1039.22Show/hide
Query:  WNAREAGNPRTFRALKELVQEKNPNVVFLLE---PKQIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVA
        WN REAGN    R+LK+LV   NP++V L E              GD N +     K GGR  N ++   F   L+ C+L DLGYTG R TW N    ++
Subjt:  WNAREAGNPRTFRALKELVQEKNPNVVFLLE---PKQIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVA

Query:  FI
         I
Subjt:  FI

XP_040996249.1 uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia]6.1e-1028.22Show/hide
Query:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLE------------------------------------------------------------PKQIIGA
        ++WN R  GNPRT R L  LV+ K P+ VFL+E                                                            P+  +G 
Subjt:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLE------------------------------------------------------------PKQIIGA

Query:  WMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFIRK
        W+  GD N I   ++K GG +  + Q   F  AL DC L D+GY GN+FTW N + G+ F ++
Subjt:  WMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVAFIRK

TrEMBL top hitse value%identityAlignment
A0A1R3JW24 Reverse transcriptase2.0e-1134.35Show/hide
Query:  PVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQI------------------IGA---------------WMVAGDLNAITKESKKDGGR
        P  +   ++WN R  GNPR  RAL+ L++++ PNV+FL+E K                    +GA               W   GD N I  + +KDGGR
Subjt:  PVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQI------------------IGA---------------WMVAGDLNAITKESKKDGGR

Query:  VFNFSQSRDFVNALNDCALKDLGYTGNRFTW
        +    Q  DF +AL DC L+D+G+ G+ FTW
Subjt:  VFNFSQSRDFVNALNDCALKDLGYTGNRFTW

A0A2N9FBJ1 Uncharacterized protein7.7e-1139.22Show/hide
Query:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQIIGAW-------MVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMN
        I WN R  GNPRT + L ELV  K+P  VF++E       W       M+  D N +   S+K GGR    +Q ++F + L+DC+ +DLG+ G  FTW N
Subjt:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQIIGAW-------MVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMN

Query:  KQ
         +
Subjt:  KQ

A0A2N9J136 Uncharacterized protein5.0e-1032.23Show/hide
Query:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK---------------------QIIG----AWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALN
        + WN R   NP   RAL +L+Q  NP ++ L E +                      + G     W++ GD N IT   +K GG + N S+  ++ N +N
Subjt:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK---------------------QIIG----AWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALN

Query:  DCALKDLGYTGNRFTWMNKQP
        +C + DLG++G +FTW N QP
Subjt:  DCALKDLGYTGNRFTWMNKQP

A0A2N9J321 CCHC-type domain-containing protein3.8e-1038.14Show/hide
Query:  WNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVA
        WN    G   T +ALK L +E +P++VFL E K     W++ GDLN+I     K GGR+   S S    + + +    DLG+ G +FTW NK+ G +
Subjt:  WNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNKQPGVA

A0A392MU50 Uncharacterized protein8.5e-1031.48Show/hide
Query:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK------QIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNK
        ++WN +  GNPRT RA K+L+   +P+++FL+E K        + ++      + I       GG     + +  F N ++ C L+DLGY G+ +TW NK
Subjt:  INWNAREAGNPRTFRALKELVQEKNPNVVFLLEPK------QIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWMNK

Query:  QPGVAFIR
          G   I+
Subjt:  QPGVAFIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCAATCGGCAGAGCCTGGAGTCCAGGCCCGTCGAGAGCCATGAAAATATCAATTGGAATGCTCGGGAAGCGGGGAATCCTCGAACATTTCGTGCACTAAAGGA
GTTGGTGCAAGAAAAGAATCCTAATGTTGTGTTTTTATTGGAACCAAAGCAAATCATAGGCGCTTGGATGGTCGCAGGTGATTTGAATGCAATTACCAAAGAAAGCAAAA
AAGATGGAGGAAGGGTGTTTAATTTCTCTCAAAGTCGGGATTTTGTGAATGCACTAAATGATTGTGCTTTAAAGGATCTTGGTTACACAGGCAATCGGTTCACCTGGATG
AACAAGCAACCGGGGGTTGCATTCATTCGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCAATCGGCAGAGCCTGGAGTCCAGGCCCGTCGAGAGCCATGAAAATATCAATTGGAATGCTCGGGAAGCGGGGAATCCTCGAACATTTCGTGCACTAAAGGA
GTTGGTGCAAGAAAAGAATCCTAATGTTGTGTTTTTATTGGAACCAAAGCAAATCATAGGCGCTTGGATGGTCGCAGGTGATTTGAATGCAATTACCAAAGAAAGCAAAA
AAGATGGAGGAAGGGTGTTTAATTTCTCTCAAAGTCGGGATTTTGTGAATGCACTAAATGATTGTGCTTTAAAGGATCTTGGTTACACAGGCAATCGGTTCACCTGGATG
AACAAGCAACCGGGGGTTGCATTCATTCGAAAATGA
Protein sequenceShow/hide protein sequence
MGFNRQSLESRPVESHENINWNAREAGNPRTFRALKELVQEKNPNVVFLLEPKQIIGAWMVAGDLNAITKESKKDGGRVFNFSQSRDFVNALNDCALKDLGYTGNRFTWM
NKQPGVAFIRK