CuGenDBv2

Gene ID	Lag0006078
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transmembrane protein
Genome location	chr6:36998873..37004301
RNA-Seq Expression	Lag0006078
Synteny	Lag0006078
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047700.1 uncharacterized protein E6C27_scaffold115G002120 [Cucumis melo var. makuwa]

7.2e-89

77.09

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVND+EF+ITTVSTMSCANIRGL TIVFGNPGFLEQKVMPLS+FANFSCQNRSEGPTIS+KCERCRFIQDD+YI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGF+FN SAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT +LQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGLLNITLYIN+LSSYI+EV S
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

XP_008441901.1 PREDICTED: uncharacterized protein LOC103485904 [Cucumis melo]

7.2e-89

77.09

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVND+EF+ITTVSTMSCANIRGL TIVFGNPGFLEQKVMPLS+FANFSCQNRSEGPTIS+KCERCRFIQDD+YI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGF+FN SAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT +LQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGLLNITLYIN+LSSYI+EV S
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

XP_022937645.1 uncharacterized protein LOC111443988 [Cucurbita moschata]

7.2e-89

77.09

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEF+ITTVSTMSCANIRGLGT VFGNPGFLEQ VMPLS FAN+SCQN SEGPTISVKCERCRFIQDD+Y+
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT ELQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGL+NITLYIN+LSSYIVEV +
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

XP_023538020.1 uncharacterized protein LOC111798904 [Cucurbita pepo subsp. pepo]

7.2e-89

77.09

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEF+ITTVSTMSCANIRGLGT VFGNPGFLEQ VMPLS FAN+SCQN SEGPTISVKCERCRFIQDD+Y+
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT ELQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGL+NITLYIN+LSSYIVEV +
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

XP_038889680.1 uncharacterized protein LOC120079539 isoform X1 [Benincasa hispida]

7.2e-89

77.97

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDL+SFVND+EF+ITTVSTMSCANIRGL TIVFGNPGFLEQKVM LSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGF+FN SAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT ELQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LEN NDGLLNITLYIN+LSSYIVEV+S
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B545 uncharacterized protein LOC103485904

3.5e-89

77.09

Show/hide

Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVND+EF+ITTVSTMSCANIRGL TIVFGNPGFLEQKVMPLS+FANFSCQNRSEGPTIS+KCERCRFIQDD+YI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGF+FN SAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT +LQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGLLNITLYIN+LSSYI+EV S
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

A0A5D3CAW9 Uncharacterized protein

3.5e-89

77.09

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVND+EF+ITTVSTMSCANIRGL TIVFGNPGFLEQKVMPLS+FANFSCQNRSEGPTIS+KCERCRFIQDD+YI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGF+FN SAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT +LQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGLLNITLYIN+LSSYI+EV S
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

A0A6J1ESU2 uncharacterized protein LOC111436176 isoform X2

5.9e-89

77.78

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHN+KAANAPDLVSFVNDMEF+ITTVSTMSC+NIRGL TIVFGNPGFL QKVMPLSNFANFSCQNRSEGPTISVKCE+CRFIQDDIYI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQF+DLPNNPASAVGFQFNFS+KDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT ELQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEV
        LENAN+GLLNITLYIN+LSSYIVEV
Subjt:  LENANDGLLNITLYINVLSSYIVEV

A0A6J1FBT5 uncharacterized protein LOC111443988

3.5e-89

77.09

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEF+ITTVSTMSCANIRGLGT VFGNPGFLEQ VMPLS FAN+SCQN SEGPTISVKCERCRFIQDD+Y+
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT ELQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGL+NITLYIN+LSSYIVEV +
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

A0A6J1HLS7 uncharacterized protein LOC111465369

3.5e-89

77.09

Show/hide

Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEF+ITTVSTMSCANIRGLGT VFGNPGFLEQ VMPLS FAN+SCQN SEGPTISVKCERCRFIQDD+Y+
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF                                       DSKLMQPLFHEFVSGSSFQNT ELQLS
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEVRS
        LENANDGL+NITLYIN+LSSYIVEV +
Subjt:  LENANDGLLNITLYINVLSSYIVEVRS

SwissProt top hits

e value

%identity

Alignment

P11369 LINE-1 retrotransposable element ORF2 protein

8.2e-11

26.98

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Query:  WASVSKVLDSILMANETVEEYIINKKEGLLMKLDLEKAYDKVSWEFLDSILTLKGFGKTWRNWIRGCLSNTNFLIIINGRPRGRFELLEGLDKGTPF-PL
        W ++ K ++ I   N+      +  K  +++ LD EKA+DK+   F+  +L   G    + N I+   S     I +NG       L  G  +G P  P 
Subjt:  WASVSKVLDSILMANETVEEYIINKKEGLLMKLDLEKAYDKVSWEFLDSILTLKGFGKTWRNWIRGCLSNTNFLIIINGRPRGRFELLEGLDKGTPF-PL

Query:  LFTIVGDALCRSIQYCFERNILKGLLVGKNRVEVAMLRFADDTMIFCPNEEEIMDKWWEILKLILDGACLSMNLAKTSIIGININVDKS
        LF IV + L R+I+   ++  +KG+ +GK  V++++L  ADD +++  + +   +   E+L LI              ++G  IN +KS
Subjt:  LFTIVGDALCRSIQYCFERNILKGLLVGKNRVEVAMLRFADDTMIFCPNEEEIMDKWWEILKLILDGACLSMNLAKTSIIGININVDKS

Arabidopsis top hits

e value

%identity

Alignment

AT4G20520.1 RNA binding;RNA-directed DNA polymerases

6.9e-05

39.29

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Query:  DSILMANETVEEYIINKKEG----LLMKLDLEKAYDKVSWEFLDSILTLKGFGKTW
        D+I+   E V  + + +K+G    +L+KLDLEKAYD++ W++L+  L   GF + W
Subjt:  DSILMANETVEEYIINKKEG----LLMKLDLEKAYDKVSWEFLDSILTLKGFGKTW

AT5G16520.1 unknown protein

1.6e-57

48.44

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Query:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI
        LLYQII+KR+IEVHNV+A  +PDL+SF ND+EF+IT VS MSC+N+RG+G +V GNPGF E KV  LS+  +++C+N + GPT++ KC +CR   D IYI
Subjt:  LLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYI

Query:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS
        SW FVDLP++PA+AVGFQFNF++K+   +   SF                                       D KL+QPLFHEF+ GS +++T +LQ S
Subjt:  SWQFVDLPNNPASAVGFQFNFSAKDHVQKNQESF---------------------------------------DSKLMQPLFHEFVSGSSFQNTKELQLS

Query:  LENANDGLLNITLYINVLSSYIVEV
        +  + DG+LN TL+IN LS+YIVE+
Subjt:  LENANDGLLNITLYINVLSSYIVEV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACCAAAAGGTTGCTTTACCAAATCATATCAAAGAGAAGCATCGAAGTGCATAATGTGAAAGCAGCAAATGCACCAGACTTGGTTTCCTTTGTGAATGACATGGAATT
TGATATAACCACAGTCTCTACCATGAGTTGTGCAAATATTCGTGGTCTTGGTACTATTGTGTTTGGAAATCCTGGTTTTCTGGAACAGAAAGTAATGCCTCTGTCAAATT
TTGCAAACTTCTCCTGTCAAAACAGGAGTGAAGGGCCAACTATAAGTGTTAAGTGTGAAAGATGTCGTTTCATTCAGGATGATATTTATATCTCATGGCAGTTTGTTGAT
CTTCCAAATAATCCTGCCAGTGCTGTTGGATTTCAGTTTAACTTCTCTGCTAAGGATCATGTTCAAAAGAATCAGGAAAGTTTTGATTCCAAGCTCATGCAGCCTTTATT
TCATGAGTTTGTTTCAGGTTCATCGTTTCAAAATACCAAGGAGCTCCAGTTATCCCTTGAAAATGCCAATGATGGTCTACTCAATATCACCTTGTACATAAATGTTCTCT
CTTCCTACATCGTAGAGGTCAGGAGTTTCAGAGACCACATGGAGATGATCGAGGAGTTCCTCCTCCATCCACCTTTCAAAGATAAAGGGAAGTTACTTTGGTCTACAGGG
GTGTGCGCTGTTTTGTGGGATTTATGGGGCGAGAGAAATAATAGGATCTTTAGAGGTTCAGAGAGGTCCCCATCTGATGTGTGGACCCTTATTAGATTTCATGTCTCTCT
TTGGGCTTCGGTTTCGAAGGTTTTAGATTCGATTCTTATGGCAAACGAGACAGTGGAAGAGTATATAATCAACAAGAAGGAGGGTCTCTTGATGAAACTTGATCTTGAGA
AAGCTTATGATAAGGTTAGTTGGGAGTTCCTTGATTCCATCCTTACTCTCAAAGGTTTTGGCAAAACTTGGAGAAATTGGATTAGAGGATGCCTCTCTAATACCAACTTC
TTAATTATTATTAATGGTAGACCGAGGGGAAGATTCGAGCTTCTAGAGGGCTTAGACAAGGGGACCCCTTTCCCCCTCCTTTTCACTATTGTGGGTGATGCTTTATGTCG
ATCAATTCAATATTGCTTTGAAAGAAATATTTTGAAGGGCCTCTTGGTGGGTAAGAACAGAGTTGAGGTAGCCATGCTTCGGTTTGCTGATGACACCATGATCTTCTGCC
CAAATGAGGAAGAGATTATGGATAAGTGGTGGGAGATTCTGAAGTTGATCTTAGATGGGGCTTGCTTATCCATGAATCTTGCCAAAACCTCTATCATCGGTATCAACATA
AATGTGGATAAATCAAAGACAAGGCGGACAAAATGGGCTGTAAAGTTGAGAATTTCCCGATTAATTATCTTGGGTTCCCCGGAAGGAAACCATCATAGGGTTGCGTTCTG
GGATCCTTTGTTGGATAAATTCAATGCTAAACTGGATGTGTGGAGGCATTTTCTTTTATCCAAGGGAGGTAGAGTTACCTTGGCTTAA

mRNA sequence

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Protein sequence

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MTKRLLYQIISKRSIEVHNVKAANAPDLVSFVNDMEFDITTVSTMSCANIRGLGTIVFGNPGFLEQKVMPLSNFANFSCQNRSEGPTISVKCERCRFIQDDIYISWQFVD
LPNNPASAVGFQFNFSAKDHVQKNQESFDSKLMQPLFHEFVSGSSFQNTKELQLSLENANDGLLNITLYINVLSSYIVEVRSFRDHMEMIEEFLLHPPFKDKGKLLWSTG
VCAVLWDLWGERNNRIFRGSERSPSDVWTLIRFHVSLWASVSKVLDSILMANETVEEYIINKKEGLLMKLDLEKAYDKVSWEFLDSILTLKGFGKTWRNWIRGCLSNTNF
LIIINGRPRGRFELLEGLDKGTPFPLLFTIVGDALCRSIQYCFERNILKGLLVGKNRVEVAMLRFADDTMIFCPNEEEIMDKWWEILKLILDGACLSMNLAKTSIIGINI
NVDKSKTRRTKWAVKLRISRLIILGSPEGNHHRVAFWDPLLDKFNAKLDVWRHFLLSKGGRVTLA

Lag0006078 (gene) of Sponge gourd (AG-4) v1 genome