CuGenDBv2

Gene ID	Lag0006099
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr6:37295759..37300733
RNA-Seq Expression	Lag0006099
Synteny	Lag0006099
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-95

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK +LKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-93

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK ILKYLRRTRDYMLVYGAKDLILTGY +S+FQ DKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWL+KFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

2.7e-95

88.5

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK ILKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-95

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK +LKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

8.7e-94

87.5

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW  VK ILKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2V9 Gag/pol protein

9.4e-94

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK ILKYLRRTRDYMLVYGAKDLILTGY +S+FQ DKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWL+KFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

A0A5A7TKM4 Gag/pol protein

1.3e-95

88.5

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK ILKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

A0A5A7TZD0 Gag/pol protein

1.7e-95

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK +LKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

A0A5A7UYE8 Gag/pol protein

1.7e-95

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW AVK +LKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

A0A5A7V1F5 Gag/pol protein

4.2e-94

87.5

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Query:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK
        +G+        GLDHW  VK ILKYLRRTRDYMLVYGAKDLILTGY DS+FQ DKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYVAACEAAK
Subjt:  LGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAK

Query:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY
        E VWLRKFL DLEVVPNMN+PITLYCDNSG V NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNI DPFTK LTAKVFEGHLE LGLRDMY
Subjt:  ETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGLRDMY

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.1e-26

35.12

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Query:  DVSTLGVSLSKSGGK-GLDHWGAVKNILKYLRRTRDYMLVYG---AKDLILTGYIDSNFQADKDSRKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAE
        D++T    LS+   K   + W  +K +L+YL+ T D  L++    A +  + GY+DS++   +  RKST+G +F + +   + W + +Q  +A S+ EAE
Subjt:  DVSTLGVSLSKSGGK-GLDHWGAVKNILKYLRRTRDYMLVYG---AKDLILTGYIDSNFQADKDSRKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAE

Query:  YVAACEAAKETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHL
        Y+A  EA +E +WL+  LT + +   +  PI +Y DN G +  +  P  HKR KHI+ KYH  RE VQ   + +  I +E+ + D FTK L A  F    
Subjt:  YVAACEAAKETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHL

Query:  EGLGL
        + LGL
Subjt:  EGLGL

P0CV72 Secreted RxLR effector protein 161

5.8e-16

48.91

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Query:  HWGAVKNILKYLRRTRDYMLVY-GAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKETVWL
        HW A+K +L+YL+ T+ Y L +  A    L GY D+++  D +SR+STSG +F LNGG V WRS KQ  +A S+ E EY+A  EA +E VWL
Subjt:  HWGAVKNILKYLRRTRDYMLVY-GAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKETVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-34

43.24

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Query:  GLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKETVWLRKFLTD
        G +HW AVK IL+YLR T    L +G  D IL GY D++   D D+RKS++G +FT +GGA+ W+S  Q C+A ST EAEY+AA E  KE +WL++FL +
Subjt:  GLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKETVWLRKFLTD

Query:  LEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGL
        L +     V   +YCD+   +  SK    H R KHI+ +YH IRE+V    + V KI++  N  D  TK +    FE   E +G+
Subjt:  LEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFEGHLEGLGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.7e-18

34.97

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Query:  LDVSTLGVSLSK-SGGKGLDHWGAVKNILKYLRRTRDYMLVYGAK-DLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
        LD+S     LS+ S    L H  AV  IL Y++ T    L Y ++ ++ L  + D++FQ+ KD+R+ST+G    L    + W+S KQ  ++ S+ EAEY 
Subjt:  LDVSTLGVSLSK-SGGKGLDHWGAVKNILKYLRRTRDYMLVYGAK-DLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV

Query:  AACEAAKETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIRE
        A   A  E +WL +F  +L++   ++ P  L+CDN+  +  +     H+R KHIE   H +RE
Subjt:  AACEAAKETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIRE

Sequences

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CDS sequence

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ATGACAGACGCCCTTGTTCAAGACCCGGAATCAGCCCTTAGGGAACACTCATCTACTTGCCCCAATAGAGGAATGAGTGAATTCCATCTTGTAATGTTATGTTCCCAGCC
CTCACTCAGTATTGTCCTTGAAATGGATACCTACATTCGCATGTCTACTACATGGATGCTTTGGATCATTACATCTGTATCAAATACAAAACATGTCATAACACATAGTG
TCACCAGGATAAGTTCGGTTCTCTCGGTTTTGAATCCAATTGAGAACCAAATCGAACCAGTTGGTTTTGTCAAAATGAGAACCGAACGAATGTCCAATAAGGACAAAATC
AATGACCACCGCCAGGGTCGTTGTCGGAGACACCACCGGAACCTGCACAGTAGTCGGAATCGCTTTCCCTTTTCCTTCTTCTTGATTTCTTTTCTTTTTTTTCGTTACAC
TTTTCCCGCACAATTGATCGAAAGAGGGAGAAGGACAAGACCGTCGTGGTTGACCAAACCTGGGTTTGCCGTCGTTGCTTGTCGTCGGAGAAAGAGAAGACTGTTGTGGG
TTTCGGTAGCGGCTCCAGTTGTGTGGGTATCCTTCGTGCAGTTGTGCGGGAATCAATTATTGGAGCTAAAACGTGAAAATGGAGTTGATCGGGTGTTCGGGACGCGAAAA
AAGGCCAAAGAAACCGACATGGATCGAAGTTGGAAGCTTAAAGATGAGACAAGTCCGAGAGCTAGGTCAAGACGCTGCTTTTTGGACGTTTCGACGCTAGGAGTTTCCTT
AAGTAAATCAGGCGGCAAAGGGTTGGACCACTGGGGAGCGGTTAAGAATATCCTCAAGTATCTTCGGAGAACGAGGGACTACATGCTTGTGTATGGAGCTAAGGATTTGA
TTCTTACTGGATACATTGATTCTAACTTTCAAGCTGATAAGGATTCTAGGAAATCCACATCAGGGTCAGTATTCACCCTCAATGGAGGAGCAGTAGTGTGGAGAAGCATC
AAACAAGGATGCATAGCAGACTCAACCATGGAGGCTGAGTATGTAGCAGCTTGCGAAGCAGCTAAGGAGACAGTATGGCTCAGAAAGTTCTTGACTGATTTGGAAGTGGT
TCCGAATATGAACGTGCCCATAACACTATACTGTGATAACAGTGGGGTTGTAGTCAACTCAAAAGAACCTCGAAGCCACAAACGGGGTAAACACATCGAGAGGAAGTATC
ACCTGATACGGGAGATTGTGCAAAGAGGAGATGTGATCGTCACAAAGATCGCCTCGGAGCACAACATCGTTGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTGAG
GGTCATCTAGAAGGTCTAGGTCTACGAGATATGTATGCCATCTAA

mRNA sequence

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Protein sequence

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MTDALVQDPESALREHSSTCPNRGMSEFHLVMLCSQPSLSIVLEMDTYIRMSTTWMLWIITSVSNTKHVITHSVTRISSVLSVLNPIENQIEPVGFVKMRTERMSNKDKI
NDHRQGRCRRHHRNLHSSRNRFPFSFFLISFLFFRYTFPAQLIERGRRTRPSWLTKPGFAVVACRRRKRRLLWVSVAAPVVWVSFVQLCGNQLLELKRENGVDRVFGTRK
KAKETDMDRSWKLKDETSPRARSRRCFLDVSTLGVSLSKSGGKGLDHWGAVKNILKYLRRTRDYMLVYGAKDLILTGYIDSNFQADKDSRKSTSGSVFTLNGGAVVWRSI
KQGCIADSTMEAEYVAACEAAKETVWLRKFLTDLEVVPNMNVPITLYCDNSGVVVNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIVDPFTKALTAKVFE
GHLEGLGLRDMYAI

Lag0006099 (gene) of Sponge gourd (AG-4) v1 genome