; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006109 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006109
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:37427757..37428245
RNA-Seq ExpressionLag0006109
SyntenyLag0006109
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0787144.1 hypothetical protein [Gossypium trilobum]1.3e-0731.29Show/hide
Query:  MWGLDV-KWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYL
        M G D+ + I +Y+ +     +K    + T  +I Q+  +G   + H DAAF      S  GL + +  G + A Q++      +P   EA   LQ + L
Subjt:  MWGLDV-KWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYL

Query:  ARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH
          +LGV ++ V+ DS  +IK   +    +S I   I DIQ  K+SF +I F+FV +  N +AH
Subjt:  ARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH

MBA0847931.1 hypothetical protein [Gossypium schwendimanii]7.6e-0834.45Show/hide
Query:  ILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKH
        +++ DAAF    + S  GL++R   G++ A +S+      +P   EA+  LQ L L R++G + L ++ DS  +IK   +  Q  S I   I DIQ++K 
Subjt:  ILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKH

Query:  SFVKISFMFVGRNFNAFAH
        SF  I F ++ R  N  AH
Subjt:  SFVKISFMFVGRNFNAFAH

XP_012472296.1 PREDICTED: uncharacterized protein LOC105789469 [Gossypium raimondii]2.6e-0837.59Show/hide
Query:  DILQIISKGEDYILHTDAAF--LDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCES
        D LQ I K     +H DAA+  L+ RSASGI  ++R+   ++ A Q++   +   P   EA   LQ + L   LGV +LTVL DS  +IK   +    +S
Subjt:  DILQIISKGEDYILHTDAAF--LDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCES

Query:  CIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH
         I   I DIQ +K+   +I F FV +  N +AH
Subjt:  CIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH

XP_012487733.1 PREDICTED: uncharacterized protein LOC105800919 [Gossypium raimondii]7.6e-0828.57Show/hide
Query:  INDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERL
        IN++      +   G+       +  Q +S+    I+H DAAF      S  GL+  +  GD+ A Q++      +P   EA   LQ + L   LGV ++
Subjt:  INDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERL

Query:  TVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH
         ++ DS  +IK   ++   +S I   I DIQ   ++F +I F F+ +  N +AH
Subjt:  TVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH

XP_040957923.1 uncharacterized protein LOC121222088 [Gossypium hirsutum]9.9e-0831.21Show/hide
Query:  VKWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGV
        V+ I+DY+ +   A  K         +  Q +S+    I+H DAAF      S  GL+  +  G L A Q++      +P  VEA   L  + L   LGV
Subjt:  VKWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGV

Query:  ERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH
         R+ ++ DS  +IK   ++   +S I   I DIQ   +SF +I F F+ +  N +AH
Subjt:  ERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH

TrEMBL top hitse value%identityAlignment
A0A1U8P7A7 uncharacterized protein LOC1079558191.1e-0733.9Show/hide
Query:  LHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHS
        ++ DAAF +  S S  G+++R    +  A++S+     +SP   EA   LQ + L  +LG + +T++ DS  +IK  N+ T  +S I   I DIQ+ K  
Subjt:  LHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHS

Query:  FVKISFMFVGRNFNAFAH
        F +  F F+ R+ N  AH
Subjt:  FVKISFMFVGRNFNAFAH

A0A7J8NLL5 RNase H domain-containing protein (Fragment)1.1e-0738.1Show/hide
Query:  KGEDYILHTDAAF--LDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIW
        +G+   +H DAA+  L  RSASGI  ++R++  ++ A Q +          VEA   LQ + L   LGV +LTVL DS  +IK   +    +S I   I 
Subjt:  KGEDYILHTDAAF--LDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIW

Query:  DIQKVKHSFVKISFMFVGRNFNAFAH
        DIQ +K+ F +I F FV R  N +AH
Subjt:  DIQKVKHSFVKISFMFVGRNFNAFAH

A0A7J9FQD0 RNase H domain-containing protein6.3e-0831.29Show/hide
Query:  MWGLDV-KWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYL
        M G D+ + I +Y+ +     +K    + T  +I Q+  +G   + H DAAF      S  GL + +  G + A Q++      +P   EA   LQ + L
Subjt:  MWGLDV-KWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYL

Query:  ARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH
          +LGV ++ V+ DS  +IK   +    +S I   I DIQ  K+SF +I F+FV +  N +AH
Subjt:  ARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH

A0A7J9J670 RNase H domain-containing protein1.1e-0728.57Show/hide
Query:  INDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERL
        I +Y+ +  +A ++G     + +   Q++ +G   + H DAAF    S S  GL++ +  G++   Q++       P   EA   LQ + L  +LG+ ++
Subjt:  INDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERL

Query:  TVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH
         V+ DS  +IK   +     S I   I DIQ  K S+ +I F F+ +  N +AH
Subjt:  TVLSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH

A0A7J9KNI3 RNase H domain-containing protein3.7e-0834.45Show/hide
Query:  ILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKH
        +++ DAAF    + S  GL++R   G++ A +S+      +P   EA+  LQ L L R++G + L ++ DS  +IK   +  Q  S I   I DIQ++K 
Subjt:  ILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVKH

Query:  SFVKISFMFVGRNFNAFAH
        SF  I F ++ R  N  AH
Subjt:  SFVKISFMFVGRNFNAFAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0432.77Show/hide
Query:  LHTDAAFLDSRSASGIGLVLRDRFGDLQAV--QSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVK
        + TDAA+       G G V+R+   +L A+  QS    V   PL  EA  +   L  A+++G+ +L++ SDS  LI  I +E+         I+DI  + 
Subjt:  LHTDAAFLDSRSASGIGLVLRDRFGDLQAV--QSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTVLSDSLALIKCINAETQCESCIATTIWDIQKVK

Query:  HSFVKISFMFVGRNFNAFA
          F  +SF FV R+ N  A
Subjt:  HSFVKISFMFVGRNFNAFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGTCTAGATGTGAAGTGGATTAACGATTATTTATTGGACTATTGGCAGGCCAATCAGAAAGGTGCTGCGAATAACCAAACGGAGCAAGATATTCTTCAAATTAT
TTCGAAGGGAGAAGATTATATTTTGCATACTGATGCTGCATTCTTAGACTCTAGGAGTGCAAGTGGAATTGGGTTGGTGCTGCGAGATAGATTTGGAGATCTTCAAGCTG
TACAATCTCTTCAATCTCAGGTCTACACATCTCCTCTCGGGGTGGAGGCTGAAGTAGTGCTCCAAGGGCTTTACTTGGCAAGAACCTTAGGGGTGGAACGACTAACGGTC
TTGTCGGACTCGCTTGCTTTGATCAAGTGTATTAATGCGGAGACCCAGTGTGAGTCTTGCATCGCAACGACTATTTGGGATATTCAGAAGGTTAAACACTCTTTTGTTAA
GATCAGTTTTATGTTTGTTGGTCGTAACTTTAATGCCTTCGCTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGTCTAGATGTGAAGTGGATTAACGATTATTTATTGGACTATTGGCAGGCCAATCAGAAAGGTGCTGCGAATAACCAAACGGAGCAAGATATTCTTCAAATTAT
TTCGAAGGGAGAAGATTATATTTTGCATACTGATGCTGCATTCTTAGACTCTAGGAGTGCAAGTGGAATTGGGTTGGTGCTGCGAGATAGATTTGGAGATCTTCAAGCTG
TACAATCTCTTCAATCTCAGGTCTACACATCTCCTCTCGGGGTGGAGGCTGAAGTAGTGCTCCAAGGGCTTTACTTGGCAAGAACCTTAGGGGTGGAACGACTAACGGTC
TTGTCGGACTCGCTTGCTTTGATCAAGTGTATTAATGCGGAGACCCAGTGTGAGTCTTGCATCGCAACGACTATTTGGGATATTCAGAAGGTTAAACACTCTTTTGTTAA
GATCAGTTTTATGTTTGTTGGTCGTAACTTTAATGCCTTCGCTCATTGA
Protein sequenceShow/hide protein sequence
MWGLDVKWINDYLLDYWQANQKGAANNQTEQDILQIISKGEDYILHTDAAFLDSRSASGIGLVLRDRFGDLQAVQSLQSQVYTSPLGVEAEVVLQGLYLARTLGVERLTV
LSDSLALIKCINAETQCESCIATTIWDIQKVKHSFVKISFMFVGRNFNAFAH