; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006123 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006123
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:37702407..37705080
RNA-Seq ExpressionLag0006123
SyntenyLag0006123
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]2.5e-1244.79Show/hide
Query:  LGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD----EEEKQKYPRRNRME
        +G +IGE + VE+D++GK  G+ LRVKVK+N+ +PL RG+ V+I     K+W P  YE LP+FCY C  + HV +EC+    ++EK ++ R  R E
Subjt:  LGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD----EEEKQKYPRRNRME

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.1e-1145.12Show/hide
Query:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDE
        A  LGN+IG F+ VES+ N    G  LRV+V+ +V +PL RG  + +    G  WIPI YE+LPDF Y+C +L+H+ ++C +
Subjt:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDE

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.2e-1245.68Show/hide
Query:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD
        AI LGN+IG F  V+ ++ G   G  LR++V I++ +PL+RG  + I    G  WIPI YE+LPDFCY+C  + H   +CD
Subjt:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]6.0e-1141.67Show/hide
Query:  KEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQEC
        K++ AI +G  +GEF  V+ +++    G  LRVKV+I +E+PL+RG  + +     + W PITYE LPDFCY C ++ H  + C
Subjt:  KEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQEC

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]7.9e-1141.67Show/hide
Query:  KEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQEC
        K++ AI +G  +GEF  V+ +++    G  LRVKV+I +E+PL+RG  + +     + W PITYE LPDFCY C ++ H  + C
Subjt:  KEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQEC

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein2.6e-1245.88Show/hide
Query:  KEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD
        K KY ++L NSI  F+ VE  +  +  GE+L+V+ KI+V++ L   TN+K+ +   +  IP+TYEKL DFCY C  L HV QEC+
Subjt:  KEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD

A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C6.5e-1142.39Show/hide
Query:  LGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDEEEKQKYPRRNRME
        LGN  G F  VE DDNG   G  L V+V +++ +PL+RG  V+I S     W+   Y +LPDFC++C K+ H   +C EE   K  RR + E
Subjt:  LGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDEEEKQKYPRRNRME

A0A6J1BSZ1 uncharacterized protein LOC1110054811.0e-1145.12Show/hide
Query:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDE
        A  LGN+IG F+ VES+ N    G  LRV+V+ +V +PL RG  + +    G  WIPI YE+LPDF Y+C +L+H+ ++C +
Subjt:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDE

A0A6J1DU55 uncharacterized protein LOC1110231352.0e-1245.68Show/hide
Query:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD
        AI LGN+IG F  V+ ++ G   G  LR++V I++ +PL+RG  + I    G  WIPI YE+LPDFCY+C  + H   +CD
Subjt:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECD

A0A803NW03 Uncharacterized protein3.2e-1045Show/hide
Query:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQEC
        A +LGN IGEF  V  D   +  G  LR +VK+NV +PL RG N+++  T  K W+   YE+LP++C  C +L H FQ+C
Subjt:  AISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGTNVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGACATCAACAACCAAGTAGTCGAGAAGGAAGCAGAGACCAACACAAATGAGGAAAGGGAAAAAGATAAACAACAGATGCAAAGCAAGGTCGAGGAAGAGATCCT
CAAGCAATTAGCAAAGCTAAAAATTGAGGAAGGAAGGAGAATAGTAGAGGTTGAAGATCACGATATTGAAGAGATAGATAAAGAGAAATACGCAATCTCCTTGGGGAACT
CTATAGGAGAATTTAAGACAGTAGAATCTGATGATAATGGGAAGATGGAGGGTGAAATGCTAAGAGTAAAAGTTAAAATCAACGTGGAGGAACCTCTAAAAAGAGGAACA
AATGTGAAAATAGTGTCGACGACGGGAAAAACATGGATCCCAATCACATACGAAAAACTTCCAGACTTCTGTTACTATTGCGAGAAGTTAGAACATGTTTTTCAAGAATG
CGATGAAGAAGAGAAGCAGAAATATCCAAGGAGAAACCGTATGGAGTGGAGATGCGAGAAACAAAAGGTAGCAAAGCCATATACAAAGGATGGAGTCCGGACCAAAGAGG
GTGAAATTTCGGATAATAGCGTTGATTATCCGATGAACGTTGATGAGGGAACCCCTTCAAGGTCAAATATTTTCAACCAAATAGTTGGAAATGTTGGATGCTTTATGAAT
ATAGATGAGGTTGATCCCATTGGGACTCAAATAATCCCGTATGACCAATATAGACAGGAAGAATATGCCAAGGGGGAAGATGAATTGTCTAATGCATCAAACAAAATAGA
GATTTTGGAAGATCAAGATGAAAGAATGGAAGAGATTTGTGAAGGAGAAGAATACGAGGAAGATGAGCACACTGAAATTAAAGGGGTGAAACAGATGAAGATGATCTTAG
ATGGAAACCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGACATCAACAACCAAGTAGTCGAGAAGGAAGCAGAGACCAACACAAATGAGGAAAGGGAAAAAGATAAACAACAGATGCAAAGCAAGGTCGAGGAAGAGATCCT
CAAGCAATTAGCAAAGCTAAAAATTGAGGAAGGAAGGAGAATAGTAGAGGTTGAAGATCACGATATTGAAGAGATAGATAAAGAGAAATACGCAATCTCCTTGGGGAACT
CTATAGGAGAATTTAAGACAGTAGAATCTGATGATAATGGGAAGATGGAGGGTGAAATGCTAAGAGTAAAAGTTAAAATCAACGTGGAGGAACCTCTAAAAAGAGGAACA
AATGTGAAAATAGTGTCGACGACGGGAAAAACATGGATCCCAATCACATACGAAAAACTTCCAGACTTCTGTTACTATTGCGAGAAGTTAGAACATGTTTTTCAAGAATG
CGATGAAGAAGAGAAGCAGAAATATCCAAGGAGAAACCGTATGGAGTGGAGATGCGAGAAACAAAAGGTAGCAAAGCCATATACAAAGGATGGAGTCCGGACCAAAGAGG
GTGAAATTTCGGATAATAGCGTTGATTATCCGATGAACGTTGATGAGGGAACCCCTTCAAGGTCAAATATTTTCAACCAAATAGTTGGAAATGTTGGATGCTTTATGAAT
ATAGATGAGGTTGATCCCATTGGGACTCAAATAATCCCGTATGACCAATATAGACAGGAAGAATATGCCAAGGGGGAAGATGAATTGTCTAATGCATCAAACAAAATAGA
GATTTTGGAAGATCAAGATGAAAGAATGGAAGAGATTTGTGAAGGAGAAGAATACGAGGAAGATGAGCACACTGAAATTAAAGGGGTGAAACAGATGAAGATGATCTTAG
ATGGAAACCTATAA
Protein sequenceShow/hide protein sequence
MKDINNQVVEKEAETNTNEEREKDKQQMQSKVEEEILKQLAKLKIEEGRRIVEVEDHDIEEIDKEKYAISLGNSIGEFKTVESDDNGKMEGEMLRVKVKINVEEPLKRGT
NVKIVSTTGKTWIPITYEKLPDFCYYCEKLEHVFQECDEEEKQKYPRRNRMEWRCEKQKVAKPYTKDGVRTKEGEISDNSVDYPMNVDEGTPSRSNIFNQIVGNVGCFMN
IDEVDPIGTQIIPYDQYRQEEYAKGEDELSNASNKIEILEDQDERMEEICEGEEYEEDEHTEIKGVKQMKMILDGNL