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Lag0006129 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006129
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:37829516..37834267
RNA-Seq ExpressionLag0006129
SyntenyLag0006129
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032601.1 uncharacterized protein E6C27_scaffold43053G00700 [Cucumis melo var. makuwa]2.5e-5275.18Show/hide
Query:  TLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLW
        + + +P  G  +GEKPEKF G DFK WQQKMLFYL TL+LA+FLKEDA +L EGET+KEK +A++AWKH EYLC+NYILNGLDNTLYNVYS VDSAK LW
Subjt:  TLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLW

Query:  ESLEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
         SLEKKYKTE AG KKFIVGKFLDYKMV+S+TVISQ+
Subjt:  ESLEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

RVW26252.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.9e-5070.37Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ A++AWKH ++LCRNY+LNGLDNTLYNVY  +  AK LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+TVISQ+
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

RVW42300.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.1e-5063.4Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ A++AWKH ++LCRNY+LNGLDNTLYNVY  + + K LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQISRTIVSQDRTNYPPMNVA
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+TVISQ+    V     +Y  M+++
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQISRTIVSQDRTNYPPMNVA

RVW83338.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.0e-4969.63Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ A++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+ VISQ+
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

RVW84499.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.4e-5070.37Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK++A++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+TVISQ+
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

TrEMBL top hitse value%identityAlignment
A0A438CSS8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-5070.37Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ A++AWKH ++LCRNY+LNGLDNTLYNVY  +  AK LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+TVISQ+
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

A0A438E3U6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-5063.4Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+ A++AWKH ++LCRNY+LNGLDNTLYNVY  + + K LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQISRTIVSQDRTNYPPMNVA
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+TVISQ+    V     +Y  M+++
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQISRTIVSQDRTNYPPMNVA

A0A438HJC7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-5070.37Show/hide
Query:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES
        S +P     +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK++A++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+S
Subjt:  SPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWES

Query:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
        L+KKYKTEDAG+KKFIVGKFLD+KM+DS+TVISQ+
Subjt:  LEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

A0A5A7SSS0 CCHC-type domain-containing protein1.2e-5275.18Show/hide
Query:  TLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLW
        + + +P  G  +GEKPEKF G DFK WQQKMLFYL TL+LA+FLKEDA +L EGET+KEK +A++AWKH EYLC+NYILNGLDNTLYNVYS VDSAK LW
Subjt:  TLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLW

Query:  ESLEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
         SLEKKYKTE AG KKFIVGKFLDYKMV+S+TVISQ+
Subjt:  ESLEKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQI

A5CBN2 Uncharacterized protein9.7e-5073.02Show/hide
Query:  YGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTED
        +GEKPEKFNG++FK WQQKMLFYLTTL+LARFL E+  +L+EGET+KEK+  ++AWKH ++LCRNY+LNGLDNTLYNVY  + +AK LW+SL+KKYKTED
Subjt:  YGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESLEKKYKTED

Query:  AGVKKFIVGKFLDYKMVDSRTVISQI
        AG+KKFIVGKFLD+KM+DS+TVISQ+
Subjt:  AGVKKFIVGKFLDYKMVDSRTVISQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G00980.1 zinc knuckle (CCHC-type) family protein2.0e-1027.48Show/hide
Query:  KPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEG---ETDKEKLMALEA----WKHVEYLCRNYILNGLDNTLYNVYS-GVDSAKGLWESLEKK
        K  +F+G  +  W  +M  +L  L L   L E    +      ET+  ++   +A    W   +YLC  +++N L + LY  YS     AK LW+ L+  
Subjt:  KPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEG---ETDKEKLMALEA----WKHVEYLCRNYILNGLDNTLYNVYS-GVDSAKGLWESLEKK

Query:  YKTEDAGVKKFIVGKFLDYKMVDSRTVISQI
        Y+ +++  K+  V K+++++MV+ R ++ Q+
Subjt:  YKTEDAGVKKFIVGKFLDYKMVDSRTVISQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAATAATACCGAAGACACTGAGTCCCATACCACAAGGTGGTGGAAATTATGGGGAAAAGCCTGAGAAGTTCAACGGAAGTGACTTCAAAGGTTGGCAACAAAA
GATGTTGTTCTATCTCACAACATTGAGTCTGGCAAGATTTCTCAAAGAAGATGCTCATGTTCTGGATGAAGGAGAGACCGACAAAGAAAAGTTGATGGCACTTGAGGCAT
GGAAACATGTAGAATATTTGTGCAGGAACTATATCTTGAATGGACTAGACAACACACTATATAATGTTTATAGTGGGGTTGATTCGGCAAAAGGTCTTTGGGAATCACTG
GAAAAGAAATATAAGACGGAGGATGCTGGAGTAAAGAAATTTATAGTTGGAAAATTTCTAGACTATAAAATGGTTGATTCCAGAACCGTCATAAGCCAGATATCACGAAC
AATTGTCTCCCAGGATAGGACGAATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGATGAGGGGAGAAGACGTGGCCTGCAAGACGGAAAACC
TGCACACCGGTGTGGTGCTAGTCACACCGACTCCGATGCTTAAGTCAGAAAACGGAAGTATGGGGGCTAGAGAAAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACC
GGGGCGGCCAAAGGCGATAGGGACCAAGCGGAGTCGGACGAGCTCGACCCGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCAATAATACCGAAGACACTGAGTCCCATACCACAAGGTGGTGGAAATTATGGGGAAAAGCCTGAGAAGTTCAACGGAAGTGACTTCAAAGGTTGGCAACAAAA
GATGTTGTTCTATCTCACAACATTGAGTCTGGCAAGATTTCTCAAAGAAGATGCTCATGTTCTGGATGAAGGAGAGACCGACAAAGAAAAGTTGATGGCACTTGAGGCAT
GGAAACATGTAGAATATTTGTGCAGGAACTATATCTTGAATGGACTAGACAACACACTATATAATGTTTATAGTGGGGTTGATTCGGCAAAAGGTCTTTGGGAATCACTG
GAAAAGAAATATAAGACGGAGGATGCTGGAGTAAAGAAATTTATAGTTGGAAAATTTCTAGACTATAAAATGGTTGATTCCAGAACCGTCATAAGCCAGATATCACGAAC
AATTGTCTCCCAGGATAGGACGAATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGATGAGGGGAGAAGACGTGGCCTGCAAGACGGAAAACC
TGCACACCGGTGTGGTGCTAGTCACACCGACTCCGATGCTTAAGTCAGAAAACGGAAGTATGGGGGCTAGAGAAAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACC
GGGGCGGCCAAAGGCGATAGGGACCAAGCGGAGTCGGACGAGCTCGACCCGCGCTAG
Protein sequenceShow/hide protein sequence
MSSIIPKTLSPIPQGGGNYGEKPEKFNGSDFKGWQQKMLFYLTTLSLARFLKEDAHVLDEGETDKEKLMALEAWKHVEYLCRNYILNGLDNTLYNVYSGVDSAKGLWESL
EKKYKTEDAGVKKFIVGKFLDYKMVDSRTVISQISRTIVSQDRTNYPPMNVALQSQDSRTLMRGEDVACKTENLHTGVVLVTPTPMLKSENGSMGARENSEAFRDKPGGT
GAAKGDRDQAESDELDPR