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Lag0006152 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006152
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionzf-RVT domain-containing protein
Genome locationchr6:38321266..38321667
RNA-Seq ExpressionLag0006152
SyntenyLag0006152
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0937.62Show/hide
Query:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL
        W ++ ++L + + D       W L  +  F + S+   LS  S+SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +
Subjt:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL

Query:  C
        C
Subjt:  C

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-0942.5Show/hide
Query:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC
        W L  +  F + S+  +LS +  SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +C
Subjt:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0937.62Show/hide
Query:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL
        W ++ ++L + + D       W L  +  F + S+   LS  S+SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +
Subjt:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL

Query:  C
        C
Subjt:  C

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]6.7e-1038.24Show/hide
Query:  IEDWISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLSSSSPSAYFELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL
        +++  +++  LQS    +  D   W L  + SF+ KS    L+  SPS    L  HIW  +  K+VKFFLW +++  +NTH K+QK +   MLSPS C L
Subjt:  IEDWISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLSSSSPSAYFELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL

Query:  CY
        C+
Subjt:  CY

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-0942.5Show/hide
Query:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC
        W L  +  F + S+  +LS +  SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +C
Subjt:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC

TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.5e-1037.62Show/hide
Query:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL
        W ++ ++L + + D       W L  +  F + S+   LS  S+SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +
Subjt:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL

Query:  C
        C
Subjt:  C

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.5e-1037.62Show/hide
Query:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL
        W ++ ++L + + D       W L  +  F + S+   LS  S+SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +
Subjt:  WISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLS--SSSPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL

Query:  C
        C
Subjt:  C

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein9.4e-1042.5Show/hide
Query:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC
        W L  +  F + S+  +LS +  SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +C
Subjt:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC

A0A5D3C7R2 DUF21 domain-containing protein3.2e-1038.24Show/hide
Query:  IEDWISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLSSSSPSAYFELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL
        +++  +++  LQS    +  D   W L  + SF+ KS    L+  SPS    L  HIW  +  K+VKFFLW +++  +NTH K+QK +   MLSPS C L
Subjt:  IEDWISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLSSSSPSAYFELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPL

Query:  CY
        C+
Subjt:  CY

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein9.4e-1042.5Show/hide
Query:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC
        W L  +  F + S+  +LS +  SP+ +   LYK +W   +PK+ KFF+W + H CINT D+LQKR P   LSP+ C +C
Subjt:  WDLERDKSFSSKSLSNLLSSS--SPSAYF-ELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKLQKRYPGMMLSPSCCPLC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCATCGCTGATTTTTGGTGCTCCCAATCTAAATCTTGGGTGTTCTATCCAAGGAGAAACCTCAGATTCAAGGATTGAAGATTGGATCTCATTAGTATCCAACTT
GCAATCGGTGATTAATGATAACAAAAGCGACATTTGGTGGTGGGATTTGGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGCCAA
GTGCTTATTTTGAATTATACAAACACATTTGGGCTGGTCGATACCCCAAAAGGGTGAAATTCTTCCTATGGGAAGTAAGCCATTCTTGCATCAACACACATGACAAGCTC
CAAAAGAGATATCCTGGGATGATGCTATCCCCATCTTGCTGTCCGTTATGTTATAGTGGGAAGAATCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCATCGCTGATTTTTGGTGCTCCCAATCTAAATCTTGGGTGTTCTATCCAAGGAGAAACCTCAGATTCAAGGATTGAAGATTGGATCTCATTAGTATCCAACTT
GCAATCGGTGATTAATGATAACAAAAGCGACATTTGGTGGTGGGATTTGGAGAGAGATAAATCATTCTCTTCTAAATCTCTTTCTAACCTCTTATCATCCTCCTCGCCAA
GTGCTTATTTTGAATTATACAAACACATTTGGGCTGGTCGATACCCCAAAAGGGTGAAATTCTTCCTATGGGAAGTAAGCCATTCTTGCATCAACACACATGACAAGCTC
CAAAAGAGATATCCTGGGATGATGCTATCCCCATCTTGCTGTCCGTTATGTTATAGTGGGAAGAATCATTGA
Protein sequenceShow/hide protein sequence
MLSSLIFGAPNLNLGCSIQGETSDSRIEDWISLVSNLQSVINDNKSDIWWWDLERDKSFSSKSLSNLLSSSSPSAYFELYKHIWAGRYPKRVKFFLWEVSHSCINTHDKL
QKRYPGMMLSPSCCPLCYSGKNH