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Lag0006164 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006164
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:38426389..38429880
RNA-Seq ExpressionLag0006164
SyntenyLag0006164
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]4.2e-2357.89Show/hide
Query:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL
        ++VRFFIWQVL GRVNT+D+L RK T  V PFCC+LC+KAEEDLDH+   CQ+AR+VWS F    G+        R  I+EFLLH SF+D+  FL
Subjt:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL

TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]7.1e-2357.89Show/hide
Query:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL
        ++VRFFIWQVL GRVNT+D+L RK T  V PFCC+LC+KAEEDLDH+   CQ+AR+VWS F    G+        R  I+EFLLH SF+D+  FL
Subjt:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL

TYK11201.1 SIL1 [Cucumis melo var. makuwa]2.7e-2251.92Show/hide
Query:  KVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL
        ++K+P+K RFFI QVL G +NTID+L + MT LV PF C LC+KA+EDLD++ W CQ  R+VW+ F   F          R  I+EFLLHP FR+K   L
Subjt:  KVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL

Query:  WQAG
        W AG
Subjt:  WQAG

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-3043.29Show/hide
Query:  DSSSGSSSFSILERVRHWTASIDSVLGA----IREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDK
        D  + SSS S +  +  +  + +  L      + EG R+V  WS NP +G S +SLF   L+PSP  E VF  +W++K+ +KVRFF WQVL  R N +D+
Subjt:  DSSSGSSSFSILERVRHWTASIDSVLGA----IREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDK

Query:  LSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLL
        L R+        CCILCRKA+EDLDH+LW CQ+AR+VW  F   F ++       R+ I+EFLL
Subjt:  LSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLL

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]2.3e-2152.08Show/hide
Query:  AIREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHI
        + REGRRD+  W+ NP  G    S+F   L+P+P  E VF ++W   +P+KV FFIWQVL  +VN +D+L R+ TSLV  FCC+LC+KAE DLDH+
Subjt:  AIREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHI

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025431.1e-2152.08Show/hide
Query:  AIREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHI
        + REGRRD+  W+ NP  G    S+F   L+P+P  E VF ++W   +P+KV FFIWQVL  +VN +D+L R+ TSLV  FCC+LC+KAE DLDH+
Subjt:  AIREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHI

A0A5A7VJE4 zf-RVT domain-containing protein2.0e-2357.89Show/hide
Query:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL
        ++VRFFIWQVL GRVNT+D+L RK T  V PFCC+LC+KAEEDLDH+   CQ+AR+VWS F    G+        R  I+EFLLH SF+D+  FL
Subjt:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL

A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X23.4e-2357.89Show/hide
Query:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL
        ++VRFFIWQVL GRVNT+D+L RK T  V PFCC+LC+KAEEDLDH+   CQ+AR+VWS F    G+        R  I+EFLLH SF+D+  FL
Subjt:  RKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL

A0A5D3CHC7 SIL11.3e-2251.92Show/hide
Query:  KVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL
        ++K+P+K RFFI QVL G +NTID+L + MT LV PF C LC+KA+EDLD++ W CQ  R+VW+ F   F          R  I+EFLLHP FR+K   L
Subjt:  KVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLLHPSFRDKGRFL

Query:  WQAG
        W AG
Subjt:  WQAG

A0A5D3E255 Reverse transcriptase5.9e-3143.29Show/hide
Query:  DSSSGSSSFSILERVRHWTASIDSVLGA----IREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDK
        D  + SSS S +  +  +  + +  L      + EG R+V  WS NP +G S +SLF   L+PSP  E VF  +W++K+ +KVRFF WQVL  R N +D+
Subjt:  DSSSGSSSFSILERVRHWTASIDSVLGA----IREGRRDVRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDK

Query:  LSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLL
        L R+        CCILCRKA+EDLDH+LW CQ+AR+VW  F   F ++       R+ I+EFLL
Subjt:  LSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQEFLL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.3e-0729.25Show/hide
Query:  GRRDVRCWSLNPVEGLSCRSLFRWFL---NPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQ
        G RD   W  +     S RS +        P P+  S F+ LWKV++P +V+ F+W V +  V T ++  R+  S  +   C +C+   E + H+L  C 
Subjt:  GRRDVRCWSLNPVEGLSCRSLFRWFL---NPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQ

Query:  FARSVW
            +W
Subjt:  FARSVW

Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-0532.93Show/hide
Query:  LNPSPHSESVFSILW-KVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPF
        LNP       F  +W K KIP K  F  W  +  R++T D++       + P  C+ C   +E   H+ + C+FAR VW  F
Subjt:  LNPSPHSESVFSILW-KVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPF

AT2G02650.1 Ribonuclease H-like superfamily protein1.2e-0728.16Show/hide
Query:  LNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQ
        + P P S  V   +WK+ +  K++ F+W+ + G + T  +L R      DP C   C + EE + HI+++C + +SVW       G Q    S F + + 
Subjt:  LNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQARHFSDFREMIQ

Query:  EFL
          +
Subjt:  EFL

AT3G25270.1 Ribonuclease H-like superfamily protein1.7e-0628.21Show/hide
Query:  LNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVW
        + P P    + + +WK+K   K++ F+W++L G + T D L R+   + +   C  C + +E   H+ + C +A+ VW
Subjt:  LNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVW

AT4G29090.1 Ribonuclease H-like superfamily protein3.2e-0526.67Show/hide
Query:  PHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWS
        P    ++  +WK +   K++ F+W+ L   +     L+ +   L     CI C   +E ++H+L+ C FAR  W+
Subjt:  PHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCATGAAGCCCCCTCTGCTATGCTTGCGTCCGAGTTCGATTCGTTTTTGAGTGTCCGAGCGAGCCACTTCTTCATCTCCTTCCCTCAACCCCTCCACCTTCTTCT
TCACATCTCCGACGCCGGCGCCGGCGGCCGGCCACCGCTCGCCTCCACCGGCCGGCGGCGACCGGAAATGGAGGAGGAGGGAGTCGCCGGCGGCCGGTGGCGGCGAGCGG
TGGCTGGCGCCGGAGATGTGAAGAAGAAGGTGGAGGGGTTGAGGGAAGAAGATGAAGAAATCTGGTCGTCGACCAACTTTCTCTCCATTTCCGACGACTTCTTCGGCGAG
CGGCGACAGTTCAGACACGGCGAGCAGTCCGGCGGCGGCGTCAACAGCAGCTGCTGCAGGCTCGGATTGATGACTTTTCCGGTGAGTTTTGGGAGTTGCAGCAGGTTTTC
CGGCGTTTCTTTGGTGACAGCAGGATTCTCCGGCGAGCGGCAGCGCGACAGCAGCATTTTAGAGCGGTTTTGGGCATTTGCAGTGGTTCAGCAAACTTTCCCTTCAAGTT
CCGGCGATTCAAGCAGTGGATCTTCGAGTTTCAGCATCTTGGAGCGAGTTCGTCATTGGACAGCAAGCATTGATTCTGTATTGGGGGCTATTAGGGAGGGAAGAAGGGAC
GTCCGTTGTTGGAGCCTTAACCCTGTTGAGGGGCTTTCTTGTCGGTCTCTTTTCCGGTGGTTTCTCAACCCTTCTCCCCATAGTGAATCTGTTTTTTCTATTCTCTGGAA
AGTTAAAATCCCAAGGAAGGTAAGGTTCTTTATCTGGCAAGTTCTCCACGGAAGAGTCAATACGATTGATAAGCTCTCGAGGAAGATGACTTCGTTGGTTGACCCGTTTT
GTTGCATTTTATGTCGGAAGGCAGAGGAAGATTTGGACCATATCCTTTGGAGTTGCCAGTTTGCCCGTTCAGTTTGGAGTCCTTTTTATGATGCTTTCGGGATGCAGGCG
AGACATTTCAGTGATTTTAGGGAGATGATCCAGGAGTTCCTCCTCCATCCGTCTTTTCGCGATAAGGGGAGATTTTTATGGCAAGCTGGGTGTGTGTTGTTTTATGGGGT
CTTTGGTGCGAGAGAAACAATAGAGATTTTCGTGGCATTGAGAGAGACCCTTACGATGTTTGGGCCCTTACTAGATTTTATGTTTCTCTTTGGGCCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGCATGAAGCCCCCTCTGCTATGCTTGCGTCCGAGTTCGATTCGTTTTTGAGTGTCCGAGCGAGCCACTTCTTCATCTCCTTCCCTCAACCCCTCCACCTTCTTCT
TCACATCTCCGACGCCGGCGCCGGCGGCCGGCCACCGCTCGCCTCCACCGGCCGGCGGCGACCGGAAATGGAGGAGGAGGGAGTCGCCGGCGGCCGGTGGCGGCGAGCGG
TGGCTGGCGCCGGAGATGTGAAGAAGAAGGTGGAGGGGTTGAGGGAAGAAGATGAAGAAATCTGGTCGTCGACCAACTTTCTCTCCATTTCCGACGACTTCTTCGGCGAG
CGGCGACAGTTCAGACACGGCGAGCAGTCCGGCGGCGGCGTCAACAGCAGCTGCTGCAGGCTCGGATTGATGACTTTTCCGGTGAGTTTTGGGAGTTGCAGCAGGTTTTC
CGGCGTTTCTTTGGTGACAGCAGGATTCTCCGGCGAGCGGCAGCGCGACAGCAGCATTTTAGAGCGGTTTTGGGCATTTGCAGTGGTTCAGCAAACTTTCCCTTCAAGTT
CCGGCGATTCAAGCAGTGGATCTTCGAGTTTCAGCATCTTGGAGCGAGTTCGTCATTGGACAGCAAGCATTGATTCTGTATTGGGGGCTATTAGGGAGGGAAGAAGGGAC
GTCCGTTGTTGGAGCCTTAACCCTGTTGAGGGGCTTTCTTGTCGGTCTCTTTTCCGGTGGTTTCTCAACCCTTCTCCCCATAGTGAATCTGTTTTTTCTATTCTCTGGAA
AGTTAAAATCCCAAGGAAGGTAAGGTTCTTTATCTGGCAAGTTCTCCACGGAAGAGTCAATACGATTGATAAGCTCTCGAGGAAGATGACTTCGTTGGTTGACCCGTTTT
GTTGCATTTTATGTCGGAAGGCAGAGGAAGATTTGGACCATATCCTTTGGAGTTGCCAGTTTGCCCGTTCAGTTTGGAGTCCTTTTTATGATGCTTTCGGGATGCAGGCG
AGACATTTCAGTGATTTTAGGGAGATGATCCAGGAGTTCCTCCTCCATCCGTCTTTTCGCGATAAGGGGAGATTTTTATGGCAAGCTGGGTGTGTGTTGTTTTATGGGGT
CTTTGGTGCGAGAGAAACAATAGAGATTTTCGTGGCATTGAGAGAGACCCTTACGATGTTTGGGCCCTTACTAGATTTTATGTTTCTCTTTGGGCCTCTGTGA
Protein sequenceShow/hide protein sequence
MTHEAPSAMLASEFDSFLSVRASHFFISFPQPLHLLLHISDAGAGGRPPLASTGRRRPEMEEEGVAGGRWRRAVAGAGDVKKKVEGLREEDEEIWSSTNFLSISDDFFGE
RRQFRHGEQSGGGVNSSCCRLGLMTFPVSFGSCSRFSGVSLVTAGFSGERQRDSSILERFWAFAVVQQTFPSSSGDSSSGSSSFSILERVRHWTASIDSVLGAIREGRRD
VRCWSLNPVEGLSCRSLFRWFLNPSPHSESVFSILWKVKIPRKVRFFIWQVLHGRVNTIDKLSRKMTSLVDPFCCILCRKAEEDLDHILWSCQFARSVWSPFYDAFGMQA
RHFSDFREMIQEFLLHPSFRDKGRFLWQAGCVLFYGVFGARETIEIFVALRETLTMFGPLLDFMFLFGPL