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Lag0006172 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006172
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr6:38539942..38540620
RNA-Seq ExpressionLag0006172
SyntenyLag0006172
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035180.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.1e-0882.86Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPV+VQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
KAA0063753.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.2e-0985.71Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPVDVQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-0882.86Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPV+VQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
TYK10940.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.4e-0882.86Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPVDVQ +TI  CC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]8.2e-0985.71Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPVDVQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
TrEMBL top hitse value%identityAlignment
A0A1S3C1U8 putative nuclease HARBI14.0e-0985.71Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPVDVQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
A0A5A7TXW1 Retrotransposon protein1.5e-0882.86Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPV+VQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
A0A5A7V6M3 Putative nuclease HARBI14.0e-0985.71Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPVDVQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
A0A5D3BDX0 Retrotransposon protein1.5e-0882.86Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPV+VQ +TI ACC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
A0A5D3CHV9 Putative nuclease HARBI11.2e-0882.86Show/hide
Query:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
        +LKGRWAILRGKSYYPVDVQ +TI  CC LHNLIN
Subjt:  MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLIN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCGTACTACCCTGTTGATGTGCAAGTGAAAACCATCACTGCTTGTTGCTACCTACATAACCTAATAAACACAGG
AGATGGGACAGGATCCTTCGATGGAGGCCACTCATACGGGGGAACAAGATTCAAACGGTATGGGAACAGACAACATCACATGGTCGCGCCTGCTTCAACTTCCAAGAAAG
AGAATCACGTCTGGACACCAGACAAAGATGCAATGCCTAGTTCACCTAGTCCAAGTGGGGGGGATGGTGTGGAGATAATGGGACATTTCGTCTTGGCTTCCAGAATCAAA
TTGGGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCGTACTACCCTGTTGATGTGCAAGTGAAAACCATCACTGCTTGTTGCTACCTACATAACCTAATAAACACAGG
AGATGGGACAGGATCCTTCGATGGAGGCCACTCATACGGGGGAACAAGATTCAAACGGTATGGGAACAGACAACATCACATGGTCGCGCCTGCTTCAACTTCCAAGAAAG
AGAATCACGTCTGGACACCAGACAAAGATGCAATGCCTAGTTCACCTAGTCCAAGTGGGGGGGATGGTGTGGAGATAATGGGACATTTCGTCTTGGCTTCCAGAATCAAA
TTGGGAAAATGA
Protein sequenceShow/hide protein sequence
MLKGRWAILRGKSYYPVDVQVKTITACCYLHNLINTGDGTGSFDGGHSYGGTRFKRYGNRQHHMVAPASTSKKENHVWTPDKDAMPSSPSPSGGDGVEIMGHFVLASRIK
LGK