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Lag0006173 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006173
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:38545911..38546484
RNA-Seq ExpressionLag0006173
SyntenyLag0006173
Gene Ontology termsGO:0034654 - nucleobase-containing compound biosynthetic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0055086 - nucleobase-containing small molecule metabolic process (biological process)
GO:0072528 - pyrimidine-containing compound biosynthetic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004519 - endonuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ19575.1 similar to PYRIMIDINE B [Actinidia rufa]5.0e-0649.02Show/hide
Query:  MGGNK-FYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYI
        MGG + FYV+FVG +P +Y TW  CS+QV+ F  A+YQ Y  WD+A   ++
Subjt:  MGGNK-FYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYI
KAE9465329.1 hypothetical protein C3L33_02763, partial [Rhododendron williamsianum]3.2e-0843.33Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSA
        MGG KFYV+FVG  P +Y  W  CS QV+ F GA+++ Y  WD+A   ++ +  +V+ +A
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSA
KAF7123603.1 hypothetical protein RHSIM_Rhsim12G0104200 [Rhododendron simsii]7.8e-0740Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSA
        MG  KFYV+FVG  P +Y  W  CS QV+ F G +++ Y  WD+A   ++ +  +V+++A
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSA
KAF7142433.1 hypothetical protein RHSIM_Rhsim05G0091300 [Rhododendron simsii]2.7e-0745.61Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVD
        M G KFYV+FVG  P +Y +W  CS QV+ FSGA++  +  WD+A   ++AY  +V+
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVD
WP_138789662.1 ribonuclease H family protein [Paenibacillus thermoaerophilus]8.6e-0651.02Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATY
        M   K+YV++VG  P +YTTW EC  QVH F GA ++SYE   +AEA +
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATY
TrEMBL top hitse value%identityAlignment
A0A172TIY4 Ribonuclease H1.2e-0545.1Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIA
        M  +KFYV++ G  P +YT+W EC +Q+H ++GA Y+SYE   +A+  Y A
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIA
A0A6A4MEB8 RING-type domain-containing protein (Fragment)1.5e-0843.33Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSA
        MGG KFYV+FVG  P +Y  W  CS QV+ F GA+++ Y  WD+A   ++ +  +V+ +A
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSA
A0A6P4BNV1 uncharacterized protein LOC1074662251.2e-0541.79Show/hide
Query:  KFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSARHGDLHLHNSS
        KFYV+F G +P +Y  W  C  QV  FSG ++QSY  + DA    +A+ + +DN + HG+  LH+ S
Subjt:  KFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSARHGDLHLHNSS
A0A7C3DQ91 Ribonuclease H1.6e-0547.83Show/hide
Query:  NKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATY
        +KFYV++ GH P +Y +W ECS+Q+H F+GA Y+SY+ + +A+  Y
Subjt:  NKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATY
A0A7J0H9E6 Aspartate carbamoyltransferase2.4e-0649.02Show/hide
Query:  MGGNK-FYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYI
        MGG + FYV+FVG +P +Y TW  CS+QV+ F  A+YQ Y  WD+A   ++
Subjt:  MGGNK-FYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYI
SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H2.0e-0544.68Show/hide
Query:  FYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAY
        FYV+ VG    +Y+TW +CS QV  FSGA+Y+S+    +A A   A+
Subjt:  FYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAY
Q9KEI9 Ribonuclease H3.4e-0538.78Show/hide
Query:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATY
        M  +K+YV++ G  P +YT+W  C  QV  ++GA ++SY   ++AEA +
Subjt:  MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATY
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGGAACAAATTCTACGTCATTTTCGTCGGGCACATGCCCGATGTTTACACGACGTGGTACGAATGTTCCCGCCAAGTACACAATTTTAGTGGCGCCATATACCA
GTCGTACGAGAGGTGGGACGACGCAGAAGCAACTTATATCGCTTACATCATGGAAGTGGACAACTCCGCTCGTCATGGAGACCTTCACCTTCACAATAGCTCTCCTAACC
GTGAACTAGATAGGAATATAGTCAATAGGACCGTTAGCAAATGTAGTGGAGCATACAATGTTCTCCTCTTCATAGTAGAGTTTTTGCTTGGTGTTGTCGTCATAGTAGTA
TCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCAATCCCCGACTCATGTACGACATCGAATCAGGAAACTAAACTTCTTTCGTCTTA
TTCACGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGGAACAAATTCTACGTCATTTTCGTCGGGCACATGCCCGATGTTTACACGACGTGGTACGAATGTTCCCGCCAAGTACACAATTTTAGTGGCGCCATATACCA
GTCGTACGAGAGGTGGGACGACGCAGAAGCAACTTATATCGCTTACATCATGGAAGTGGACAACTCCGCTCGTCATGGAGACCTTCACCTTCACAATAGCTCTCCTAACC
GTGAACTAGATAGGAATATAGTCAATAGGACCGTTAGCAAATGTAGTGGAGCATACAATGTTCTCCTCTTCATAGTAGAGTTTTTGCTTGGTGTTGTCGTCATAGTAGTA
TCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCAATCCCCGACTCATGTACGACATCGAATCAGGAAACTAAACTTCTTTCGTCTTA
TTCACGAGGATGA
Protein sequenceShow/hide protein sequence
MGGNKFYVIFVGHMPDVYTTWYECSRQVHNFSGAIYQSYERWDDAEATYIAYIMEVDNSARHGDLHLHNSSPNRELDRNIVNRTVSKCSGAYNVLLFIVEFLLGVVVIVV
SVHRDSSRDLALGLFLGISIPDSCTTSNQETKLLSSYSRG