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Lag0006174 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006174
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationchr6:38551073..38554774
RNA-Seq ExpressionLag0006174
SyntenyLag0006174
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027009.1 putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

XP_022947868.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]2.5e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

XP_022970735.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita maxima]2.5e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

XP_023533171.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]2.0e-1465.57Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        ++ NVNQTKLI +GLTASDE G+++G+W FNF DFD + D  +PSSISFL+QNGLDF +LK
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

XP_023533172.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]2.5e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

TrEMBL top hitse value%identityAlignment
A0A6J1CXP9 Poly(A)-specific ribonuclease1.6e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVN+TKLI +GLTASDE G I   W FNF DFD + D H+ SS+SFLKQNGLDFD+LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

A0A6J1G7T4 Poly(A)-specific ribonuclease1.2e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

A0A6J1I3Q4 Poly(A)-specific ribonuclease1.2e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

A0A6J1I4S7 Poly(A)-specific ribonuclease1.6e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

A0A6J1I6H7 Poly(A)-specific ribonuclease1.2e-1468.97Show/hide
Query:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        NVNQTK+I +G+T SDE G I G W FNF DFD E DAH+P+SI FLKQNGLDF +LK
Subjt:  NVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

SwissProt top hitse value%identityAlignment
Q9LXM2 Probable CCR4-associated factor 1 homolog 91.8e-0742.65Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISG---------AWVFNFCDFDVETDAHDPSSISFLKQNGLDFDR
        ++ NV+   LI +GLT SD  G +            W FNF DFDV  DAH P SI  L++ G+DF+R
Subjt:  MQVNVNQTKLIHMGLTASDECGKISG---------AWVFNFCDFDVETDAHDPSSISFLKQNGLDFDR

Q9LXM4 Putative CCR4-associated factor 1 homolog 88.3e-0845.9Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        M  +V++ KLI +GLT  D  G+I G W  NF DF V+ DA +  SI FL++NGLD  +++
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

Q9SAI2 Probable CCR4-associated factor 1 homolog 65.0e-0539.68Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGA-------WVFNFCDFDVETDAHDPSSISFLKQNGLD
        ++ NVN  K+I +GLT S+E G +          W FNF +FD+++D     SI  LKQ+G+D
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGA-------WVFNFCDFDVETDAHDPSSISFLKQNGLD

Q9SHJ0 Probable CCR4-associated factor 1 homolog 13.5e-0639.34Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        M+ NV  TKLI  G T  +  G+I G W  NF +F   +D  +  SI FL+++GLD  +++
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

Q9SKZ2 Probable CCR4-associated factor 1 homolog 79.1e-0741.54Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGA--------WVFNFCDFDVETDAHDPSSISFLKQNGLDF
        ++ NVN  K+I +GLT SDE G +           W FNF +FD+E+D +   SI  L+Q+G+DF
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGA--------WVFNFCDFDVETDAHDPSSISFLKQNGLDF

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0739.34Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        M+ NV  TKLI  G T  +  G+I G W  NF +F   +D  +  SI FL+++GLD  +++
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-0639.68Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGA-------WVFNFCDFDVETDAHDPSSISFLKQNGLD
        ++ NVN  K+I +GLT S+E G +          W FNF +FD+++D     SI  LKQ+G+D
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGA-------WVFNFCDFDVETDAHDPSSISFLKQNGLD

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.5e-0841.54Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGA--------WVFNFCDFDVETDAHDPSSISFLKQNGLDF
        ++ NVN  K+I +GLT SDE G +           W FNF +FD+E+D +   SI  L+Q+G+DF
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGA--------WVFNFCDFDVETDAHDPSSISFLKQNGLDF

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.9e-0945.9Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK
        M  +V++ KLI +GLT  D  G+I G W  NF DF V+ DA +  SI FL++NGLD  +++
Subjt:  MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLK

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0842.65Show/hide
Query:  MQVNVNQTKLIHMGLTASDECGKISG---------AWVFNFCDFDVETDAHDPSSISFLKQNGLDFDR
        ++ NV+   LI +GLT SD  G +            W FNF DFDV  DAH P SI  L++ G+DF+R
Subjt:  MQVNVNQTKLIHMGLTASDECGKISG---------AWVFNFCDFDVETDAHDPSSISFLKQNGLDFDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTCAATGTCAATCAGACGAAATTGATCCACATGGGTCTGACAGCCTCTGATGAATGTGGAAAGATCAGTGGCGCGTGGGTGTTCAATTTCTGTGATTTCGACGT
CGAAACTGATGCTCACGACCCTTCCTCCATTTCATTCCTGAAACAGAACGGGCTGGATTTCGACAGACTCAAACCAACGCTCACAACCCTTCCTCATGTTTTTCGATTTC
GGCTCCGAATCGAGGAGGAGGCTCCTCCTCCCCGAAACTCCATCTGTGTCGGTGGCAGTGCATTCCCTCTTTTTCGCTCGGATCTGAGGTATGTTCGTCGTTTTCCTTCA
GCTTTCTCACCATTCTTGCCTTCTTCCGAGGGTTTGTCGCCATTCTCGGATCTGAGCGAGATGTCCTCGTCGTTTGCCTTCGACGATCTGGCCGCTTGTTGTTTCGTTCT
CCCCTTTTCACTCTTTTGTCTCCTCGAAGATGGAGGATTGTTTTCCATGGTGGCTGGGGCTCGCATTTTCATTTTCAGATACTACACAATCTGTCCACCATTCGACGAGG
CCAGCGAGGAGACTGTTTGGGGGATGAAAAGCTACGTAGGGAGGCCAGAACGAGTGGAAAAACAGGTTCGATATCAACGTTTTCTGAAGGCCTATGATGAGGAACCTGTT
CTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTCAATGTCAATCAGACGAAATTGATCCACATGGGTCTGACAGCCTCTGATGAATGTGGAAAGATCAGTGGCGCGTGGGTGTTCAATTTCTGTGATTTCGACGT
CGAAACTGATGCTCACGACCCTTCCTCCATTTCATTCCTGAAACAGAACGGGCTGGATTTCGACAGACTCAAACCAACGCTCACAACCCTTCCTCATGTTTTTCGATTTC
GGCTCCGAATCGAGGAGGAGGCTCCTCCTCCCCGAAACTCCATCTGTGTCGGTGGCAGTGCATTCCCTCTTTTTCGCTCGGATCTGAGGTATGTTCGTCGTTTTCCTTCA
GCTTTCTCACCATTCTTGCCTTCTTCCGAGGGTTTGTCGCCATTCTCGGATCTGAGCGAGATGTCCTCGTCGTTTGCCTTCGACGATCTGGCCGCTTGTTGTTTCGTTCT
CCCCTTTTCACTCTTTTGTCTCCTCGAAGATGGAGGATTGTTTTCCATGGTGGCTGGGGCTCGCATTTTCATTTTCAGATACTACACAATCTGTCCACCATTCGACGAGG
CCAGCGAGGAGACTGTTTGGGGGATGAAAAGCTACGTAGGGAGGCCAGAACGAGTGGAAAAACAGGTTCGATATCAACGTTTTCTGAAGGCCTATGATGAGGAACCTGTT
CTGTGA
Protein sequenceShow/hide protein sequence
MQVNVNQTKLIHMGLTASDECGKISGAWVFNFCDFDVETDAHDPSSISFLKQNGLDFDRLKPTLTTLPHVFRFRLRIEEEAPPPRNSICVGGSAFPLFRSDLRYVRRFPS
AFSPFLPSSEGLSPFSDLSEMSSSFAFDDLAACCFVLPFSLFCLLEDGGLFSMVAGARIFIFRYYTICPPFDEASEETVWGMKSYVGRPERVEKQVRYQRFLKAYDEEPV
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