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Lag0006185 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006185
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:38745629..38749988
RNA-Seq ExpressionLag0006185
SyntenyLag0006185
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0848267.1 hypothetical protein [Gossypium schwendimanii]2.0e-1034.11Show/hide
Query:  GYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGP
        G++ ++ +     +  G     +  V+WR P++G  K+NFDASF+S+ + +   ++ RD  GQ+M   T+   +V D  MAE  A  ++L    DMG   
Subjt:  GYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGP

Query:  AILETDSS--RVLFDFVHCEGNQAAHRLA
         IL    S   V + FV  E N+AAH LA
Subjt:  AILETDSS--RVLFDFVHCEGNQAAHRLA

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.2e-2143.64Show/hide
Query:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT
        LVEWA  YVM FREA  S+   G  T   E V+W  P    YK+N DASFL+    AGLGII+R+  GQVM  AT   +N++ VDMAE   AV+ L+L +
Subjt:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT

Query:  DMGLGPAILETDSSRVL-------------------------------FDFVHCEGNQAAHRLAR
         +G+ P ILETDSSR+                                F+FV  EGN+AAH LAR
Subjt:  DMGLGPAILETDSSRVL-------------------------------FDFVHCEGNQAAHRLAR

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]5.5e-2144.3Show/hide
Query:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT
        LVEWA  Y M FREA +S+   G  T   E ++W+ P  G YK+N DASFL+    AGLGII+ +  GQVM  AT   +N++ VDMAE  AAV+ L+L +
Subjt:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT

Query:  DMGLGPAILE---------------TDSSRVLFDFVHCEGNQAAHRLAR
        ++G+ PA+ +               T S    F+FV  EGN+AAH LAR
Subjt:  DMGLGPAILE---------------TDSSRVLFDFVHCEGNQAAHRLAR

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.0e-1031.58Show/hide
Query:  SGLVEWAKGYVMAFREAGRSSREVGHETVCR--ERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSL
        S LV W++ Y+  ++ A RSS       VCR     +WR P     K+N DA+F      AG+G+I+RD  G V L A        DVD  EG+A  + +
Subjt:  SGLVEWAKGYVMAFREAGRSSREVGHETVCR--ERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSL

Query:  KLVTDMGLGPAILETDS--------------------------------SRVLFDFVHCEGNQAAHRLARL
         L  + G     +ETDS                                 RV F F H  GN  AH LA+L
Subjt:  KLVTDMGLGPAILETDS--------------------------------SRVLFDFVHCEGNQAAHRLARL

XP_028102591.1 uncharacterized protein LOC114301828 [Camellia sinensis]2.6e-1041.11Show/hide
Query:  RERVV-WRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGPAILETDSSRVL
        RERVV W AP  GW+K+NFD +    L   G+G+++R+ +G+VM   T       D D  E +AA K++ L TD+G    ILE DS  ++
Subjt:  RERVV-WRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGPAILETDSSRVL

TrEMBL top hitse value%identityAlignment
A0A0D9VWP3 RNase H domain-containing protein3.6e-1039.13Show/hide
Query:  TVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGPAILETDSSRVL
        TV R   +W+ P+ GW K+N D ++ S      LG+I+RD  GQ +  ++    +V D  MAE YA +++ +L  +MG+  AI ETDS  VL
Subjt:  TVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGPAILETDSSRVL

A0A6J1CIF1 uncharacterized protein LOC1110112371.6e-2143.64Show/hide
Query:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT
        LVEWA  YVM FREA  S+   G  T   E V+W  P    YK+N DASFL+    AGLGII+R+  GQVM  AT   +N++ VDMAE   AV+ L+L +
Subjt:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT

Query:  DMGLGPAILETDSSRVL-------------------------------FDFVHCEGNQAAHRLAR
         +G+ P ILETDSSR+                                F+FV  EGN+AAH LAR
Subjt:  DMGLGPAILETDSSRVL-------------------------------FDFVHCEGNQAAHRLAR

A0A6J1DAR4 uncharacterized protein LOC1110189542.7e-2144.3Show/hide
Query:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT
        LVEWA  Y M FREA +S+   G  T   E ++W+ P  G YK+N DASFL+    AGLGII+ +  GQVM  AT   +N++ VDMAE  AAV+ L+L +
Subjt:  LVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVT

Query:  DMGLGPAILE---------------TDSSRVLFDFVHCEGNQAAHRLAR
        ++G+ PA+ +               T S    F+FV  EGN+AAH LAR
Subjt:  DMGLGPAILE---------------TDSSRVLFDFVHCEGNQAAHRLAR

A0A6J1DBJ7 uncharacterized protein LOC1110189739.5e-1131.58Show/hide
Query:  SGLVEWAKGYVMAFREAGRSSREVGHETVCR--ERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSL
        S LV W++ Y+  ++ A RSS       VCR     +WR P     K+N DA+F      AG+G+I+RD  G V L A        DVD  EG+A  + +
Subjt:  SGLVEWAKGYVMAFREAGRSSREVGHETVCR--ERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSL

Query:  KLVTDMGLGPAILETDS--------------------------------SRVLFDFVHCEGNQAAHRLARL
         L  + G     +ETDS                                 RV F F H  GN  AH LA+L
Subjt:  KLVTDMGLGPAILETDS--------------------------------SRVLFDFVHCEGNQAAHRLARL

A0A7J9KP65 RNase H domain-containing protein9.5e-1134.11Show/hide
Query:  GYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGP
        G++ ++ +     +  G     +  V+WR P++G  K+NFDASF+S+ + +   ++ RD  GQ+M   T+   +V D  MAE  A  ++L    DMG   
Subjt:  GYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLGIIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGP

Query:  AILETDSS--RVLFDFVHCEGNQAAHRLA
         IL    S   V + FV  E N+AAH LA
Subjt:  AILETDSS--RVLFDFVHCEGNQAAHRLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTGTTATGGTCAAATTTGGTCGAGAGGAACTCACCTGACTTTCACATGCCACCAACGGTAAATTTGTTTGAGAGGGGAGAAGACGTGGCCTGCAAGACAGTAAA
CCTGCACACCGGTGTGGTGCTAGCCATACCGCCTCCGATGCTTAAGTCAGCAATCAGAACGATGGGAAGCAAGAAAGTAAAAGCAAAAGGAGAGAATTCGGAGGCGTTTC
AGGACGAACCAGGCGGAACCGGGGCGGCTAGAGGCAATAGGGACCGAGAGGAGGCAAACGAACTCGGCCCGCATAAGCGGGTCGACCATATGGGTCGGGGCAAGTTGGCC
CGACCCCGTTGGTCTGGTCTTCCTCTGCGTCGTTTCGTGGTCCTATCTTCGCTCGATTGTCCTCGTCAGCTCCTTGCACATCATGGTGGTCCAAAATTACCTACAACAGC
CTATAATGCGAGGATAGGGGCTGACTTGAGGCCGAGTGGGCTAGTGGAATGGGCTAAGGGGTATGTGATGGCTTTTCGTGAGGCTGGGAGGAGCAGTAGGGAAGTGGGTC
ATGAGACGGTTTGTCGTGAGAGGGTAGTGTGGCGGGCCCCGAGGAATGGCTGGTACAAGATGAATTTTGATGCCTCATTCCTCTCTCATTTGTCCAGGGCCGGCCTAGGG
ATAATTGTGCGGGATCCTCTGGGCCAAGTGATGCTTTTGGCGACTTTCACTAAGGACAATGTGAGAGATGTTGATATGGCTGAAGGATATGCAGCCGTGAAAAGTTTGAA
GTTGGTGACAGATATGGGTTTGGGTCCAGCAATTCTTGAGACGGACTCGAGTAGAGTACTATTTGATTTCGTTCACTGTGAAGGGAATCAGGCGGCGCACCGATTGGCGA
GATTACATGGAGGAGATTGCTTGATTATGGAGGGGTTTGGTTGTTTACAGGCTAGTGGTAGACTTGAAGGCCTAGATCTACTTTATGGGGTTCATAAGCCTGTTGTCACT
CCGATAGGGGTAAGTCGGTCTCCCATGCGAAGCCTTAGGTTCCAGTGTAAGGGGAAGATAGGTGGAGGATCTCATAAATTTGTATCTGGTCCATTAGAGGCTTCTTTAGG
AAGGCTGAACACACACACGCAAGTCTTCTTGGAAAGTCTTGAGTTGCTTCATATTTTGCTAGCTTGTGATAACTTCTCTTATGCTAAAGGTCGAGTAGATGTAGTGTCGG
ATAGTGGTGAGAGGAAGGTCGCAATTCTGCATGGAACAATCCATATTTACATAGGAGGCAAGGGGATGGAGGCTTGGATGGCTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTGTTATGGTCAAATTTGGTCGAGAGGAACTCACCTGACTTTCACATGCCACCAACGGTAAATTTGTTTGAGAGGGGAGAAGACGTGGCCTGCAAGACAGTAAA
CCTGCACACCGGTGTGGTGCTAGCCATACCGCCTCCGATGCTTAAGTCAGCAATCAGAACGATGGGAAGCAAGAAAGTAAAAGCAAAAGGAGAGAATTCGGAGGCGTTTC
AGGACGAACCAGGCGGAACCGGGGCGGCTAGAGGCAATAGGGACCGAGAGGAGGCAAACGAACTCGGCCCGCATAAGCGGGTCGACCATATGGGTCGGGGCAAGTTGGCC
CGACCCCGTTGGTCTGGTCTTCCTCTGCGTCGTTTCGTGGTCCTATCTTCGCTCGATTGTCCTCGTCAGCTCCTTGCACATCATGGTGGTCCAAAATTACCTACAACAGC
CTATAATGCGAGGATAGGGGCTGACTTGAGGCCGAGTGGGCTAGTGGAATGGGCTAAGGGGTATGTGATGGCTTTTCGTGAGGCTGGGAGGAGCAGTAGGGAAGTGGGTC
ATGAGACGGTTTGTCGTGAGAGGGTAGTGTGGCGGGCCCCGAGGAATGGCTGGTACAAGATGAATTTTGATGCCTCATTCCTCTCTCATTTGTCCAGGGCCGGCCTAGGG
ATAATTGTGCGGGATCCTCTGGGCCAAGTGATGCTTTTGGCGACTTTCACTAAGGACAATGTGAGAGATGTTGATATGGCTGAAGGATATGCAGCCGTGAAAAGTTTGAA
GTTGGTGACAGATATGGGTTTGGGTCCAGCAATTCTTGAGACGGACTCGAGTAGAGTACTATTTGATTTCGTTCACTGTGAAGGGAATCAGGCGGCGCACCGATTGGCGA
GATTACATGGAGGAGATTGCTTGATTATGGAGGGGTTTGGTTGTTTACAGGCTAGTGGTAGACTTGAAGGCCTAGATCTACTTTATGGGGTTCATAAGCCTGTTGTCACT
CCGATAGGGGTAAGTCGGTCTCCCATGCGAAGCCTTAGGTTCCAGTGTAAGGGGAAGATAGGTGGAGGATCTCATAAATTTGTATCTGGTCCATTAGAGGCTTCTTTAGG
AAGGCTGAACACACACACGCAAGTCTTCTTGGAAAGTCTTGAGTTGCTTCATATTTTGCTAGCTTGTGATAACTTCTCTTATGCTAAAGGTCGAGTAGATGTAGTGTCGG
ATAGTGGTGAGAGGAAGGTCGCAATTCTGCATGGAACAATCCATATTTACATAGGAGGCAAGGGGATGGAGGCTTGGATGGCTAGCTGA
Protein sequenceShow/hide protein sequence
MFVLWSNLVERNSPDFHMPPTVNLFERGEDVACKTVNLHTGVVLAIPPPMLKSAIRTMGSKKVKAKGENSEAFQDEPGGTGAARGNRDREEANELGPHKRVDHMGRGKLA
RPRWSGLPLRRFVVLSSLDCPRQLLAHHGGPKLPTTAYNARIGADLRPSGLVEWAKGYVMAFREAGRSSREVGHETVCRERVVWRAPRNGWYKMNFDASFLSHLSRAGLG
IIVRDPLGQVMLLATFTKDNVRDVDMAEGYAAVKSLKLVTDMGLGPAILETDSSRVLFDFVHCEGNQAAHRLARLHGGDCLIMEGFGCLQASGRLEGLDLLYGVHKPVVT
PIGVSRSPMRSLRFQCKGKIGGGSHKFVSGPLEASLGRLNTHTQVFLESLELLHILLACDNFSYAKGRVDVVSDSGERKVAILHGTIHIYIGGKGMEAWMAS