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Lag0006186 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006186
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:38785080..38786344
RNA-Seq ExpressionLag0006186
SyntenyLag0006186
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055611.1 unnamed protein product [Microthlaspi erraticum]3.7e-0730.47Show/hide
Query:  YKKRDHP----HIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENH----RSQAKWIPPPQSCWKLNSDAS
        + + DHP     +++A  LLW IW  RN +I +    +  E   + N+     EE +GR        + +R   +    +S++KW PP    WK N+D S
Subjt:  YKKRDHP----HIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENH----RSQAKWIPPPQSCWKLNSDAS

Query:  WNAAEDNGGLGWIVRDSLESLICVEVKS
        W+  +D  G+GWI+RD   ++I +  K+
Subjt:  WNAAEDNGGLGWIVRDSLESLICVEVKS

KAG7593529.1 Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]1.4e-0627.87Show/hide
Query:  HPHI----QVAVILLWNIWTMRNNIIIRDPNRSKPEWN--QIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDN
        HPH+     +   +LW +W  RN+ I +       E+N  Q+  +    +EE + RK          + E ++   KW+PPP +  K N+D +W+AA  N
Subjt:  HPHI----QVAVILLWNIWTMRNNIIIRDPNRSKPEWN--QIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDN

Query:  GGLGWIVRDSLESLICVEVKSV
         G+GW++RD  + ++ +  +++
Subjt:  GGLGWIVRDSLESLICVEVKSV

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.8e-0731.97Show/hide
Query:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGR------KRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWI
        ++I+ W IW MRN  I +  +   PE   I     R I  + GR      K + +D  +  RR    + A+W PP  + WKLN++A+W A  + GG+GWI
Subjt:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGR------KRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWI

Query:  VRDSLESLICVEVKSVKEKWTI
        +RD    +I    + ++ +  I
Subjt:  VRDSLESLICVEVKSVKEKWTI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-0632.08Show/hide
Query:  KRDHPHIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQ-DFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGG
        K     + V +I  W IW  RN +I R  + S   ++ +  Q ++ + E+     SYQ +  +    +   ++ KW PPP   W LN+DASW+ +   GG
Subjt:  KRDHPHIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQ-DFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGG

Query:  LGWIVR
        +GWI+R
Subjt:  LGWIVR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.7e-0730Show/hide
Query:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQF----SRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVR
        ++I+ W IW MRN  I +  +    +   + +++    + R    KG K + +D  +  RR    + A+W PP  + WKLN+DA+W A  + GG+GWI+R
Subjt:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQF----SRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVR

Query:  DSLESLICVEVKSVKEKWTI
        D    +I  + + ++ +  I
Subjt:  DSLESLICVEVKSVKEKWTI

TrEMBL top hitse value%identityAlignment
A0A6D2KM87 RNase H domain-containing protein1.8e-0730.47Show/hide
Query:  YKKRDHP----HIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENH----RSQAKWIPPPQSCWKLNSDAS
        + + DHP     +++A  LLW IW  RN +I +    +  E   + N+     EE +GR        + +R   +    +S++KW PP    WK N+D S
Subjt:  YKKRDHP----HIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENH----RSQAKWIPPPQSCWKLNSDAS

Query:  WNAAEDNGGLGWIVRDSLESLICVEVKS
        W+  +D  G+GWI+RD   ++I +  K+
Subjt:  WNAAEDNGGLGWIVRDSLESLICVEVKS

A0A6J1CP26 uncharacterized protein LOC1110134121.4e-0731.97Show/hide
Query:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGR------KRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWI
        ++I+ W IW MRN  I +  +   PE   I     R I  + GR      K + +D  +  RR    + A+W PP  + WKLN++A+W A  + GG+GWI
Subjt:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGR------KRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWI

Query:  VRDSLESLICVEVKSVKEKWTI
        +RD    +I    + ++ +  I
Subjt:  VRDSLESLICVEVKSVKEKWTI

A0A6J1CQG0 uncharacterized protein LOC1110132161.2e-0630.33Show/hide
Query:  IQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQF-SRRIEE---TKGRKRSYQDFGIGSR-REN-HRSQAKWIPPPQSCWKLNSDASWNAAEDNGGL
        +  ++++ W IW  RN  I R     + + ++    F +  I++       +RS Q+ G   R REN +    +W  PP +CWKLN+DASW+   + GG+
Subjt:  IQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQF-SRRIEE---TKGRKRSYQDFGIGSR-REN-HRSQAKWIPPPQSCWKLNSDASWNAAEDNGGL

Query:  GWIVRDSLESLICVEVKSVKEK
        GWI+ D    ++      ++EK
Subjt:  GWIVRDSLESLICVEVKSVKEK

A0A6J1D4B6 uncharacterized protein LOC1110171811.5e-0633.08Show/hide
Query:  YKKRDHPHIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFG-IGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDN
        ++  D    Q  ++LLW+IWT RN I+            Q  +Q  R   E+K  + +    G +    +N      W PP Q  WKLN DA+W  +   
Subjt:  YKKRDHPHIQVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFG-IGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDN

Query:  GGLGWIVRDSLESLICVE-VKSVKEKWTIK
        GGLGWIVRDS    I  E +K++ +  T++
Subjt:  GGLGWIVRDSLESLICVE-VKSVKEKWTIK

A0A6J1DSV1 uncharacterized protein LOC1110236088.1e-0830Show/hide
Query:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQF----SRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVR
        ++I+ W IW MRN  I +  +    +   + +++    + R    KG K + +D  +  RR    + A+W PP  + WKLN+DA+W A  + GG+GWI+R
Subjt:  AVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQF----SRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVR

Query:  DSLESLICVEVKSVKEKWTI
        D    +I  + + ++ +  I
Subjt:  DSLESLICVEVKSVKEKWTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0529.79Show/hide
Query:  LLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRD
        LLW +W  RN ++ +      PE   +  +     EE   R R  +    G + E + S  +W  PP    K N+DA+W       G+GWI+R+
Subjt:  LLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRD

AT4G29090.1 Ribonuclease H-like superfamily protein3.0e-0729Show/hide
Query:  QVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQ-AKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRD
        Q+   LLW +W  RN ++ R    +  E   +  +    +EE + R  +      G++ + +RS   +W PPP    K N+DA+WN   +  G+GW++R+
Subjt:  QVAVILLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQ-AKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRD

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-0426.42Show/hide
Query:  LLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQA------KWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRD
        L+W IW   N+++          +N    +F   +E      + + D  + + ++N    A      KW PP +   K N DAS +      GLGWI+R+
Subjt:  LLWNIWTMRNNIIIRDPNRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQA------KWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRD

Query:  SLESLI
        S  ++I
Subjt:  SLESLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCAAAGATCCGTGTGTTCTGTGTAGGAATCAAAAAGAAACGACAAGATCCGTGGATGATCAGAGAGGGTGACAAAACTCTAAAGCTAATCAATGAGGAGATAAA
GGGCTTCAAGCAAACTCTCACCAAAAGGAAGCATCAGTCTCGGATCCTTCGAGGATTATATCCGACCAGGGCCAAGGGCCCAGAGAAGACTCGGAGTTCGGCAGCCACGA
AAACCCTAAGGGGAGCTTATAAAAAGAGGGACCACCCACACATTCAGGTTGCTGTGATTTTATTGTGGAACATATGGACAATGAGGAACAACATCATCATTAGAGACCCA
AATAGATCCAAGCCAGAGTGGAATCAAATTTTCAACCAATTCAGCAGGAGGATTGAAGAAACGAAGGGAAGAAAGAGATCGTACCAAGATTTTGGCATCGGCTCAAGACG
TGAGAACCACCGGAGTCAGGCAAAATGGATCCCCCCACCTCAGAGCTGTTGGAAACTCAATTCGGATGCCTCGTGGAATGCAGCGGAAGACAATGGGGGATTGGGTTGGA
TTGTGCGTGACTCTCTCGAGTCTCTCATCTGTGTGGAGGTGAAATCAGTTAAAGAAAAATGGACAATCAAGGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCAAAGATCCGTGTGTTCTGTGTAGGAATCAAAAAGAAACGACAAGATCCGTGGATGATCAGAGAGGGTGACAAAACTCTAAAGCTAATCAATGAGGAGATAAA
GGGCTTCAAGCAAACTCTCACCAAAAGGAAGCATCAGTCTCGGATCCTTCGAGGATTATATCCGACCAGGGCCAAGGGCCCAGAGAAGACTCGGAGTTCGGCAGCCACGA
AAACCCTAAGGGGAGCTTATAAAAAGAGGGACCACCCACACATTCAGGTTGCTGTGATTTTATTGTGGAACATATGGACAATGAGGAACAACATCATCATTAGAGACCCA
AATAGATCCAAGCCAGAGTGGAATCAAATTTTCAACCAATTCAGCAGGAGGATTGAAGAAACGAAGGGAAGAAAGAGATCGTACCAAGATTTTGGCATCGGCTCAAGACG
TGAGAACCACCGGAGTCAGGCAAAATGGATCCCCCCACCTCAGAGCTGTTGGAAACTCAATTCGGATGCCTCGTGGAATGCAGCGGAAGACAATGGGGGATTGGGTTGGA
TTGTGCGTGACTCTCTCGAGTCTCTCATCTGTGTGGAGGTGAAATCAGTTAAAGAAAAATGGACAATCAAGGTGTAA
Protein sequenceShow/hide protein sequence
MKAKIRVFCVGIKKKRQDPWMIREGDKTLKLINEEIKGFKQTLTKRKHQSRILRGLYPTRAKGPEKTRSSAATKTLRGAYKKRDHPHIQVAVILLWNIWTMRNNIIIRDP
NRSKPEWNQIFNQFSRRIEETKGRKRSYQDFGIGSRRENHRSQAKWIPPPQSCWKLNSDASWNAAEDNGGLGWIVRDSLESLICVEVKSVKEKWTIKV