; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006200 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006200
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDUF4283 domain-containing protein
Genome locationchr6:38950475..38951374
RNA-Seq ExpressionLag0006200
SyntenyLag0006200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056838.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-1739.32Show/hide
Query:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD
        DS  H   +V+PSYGGW++ R I LHLW    F+ IG+  GGF   A+    +   +D  IK+R NY GF+P  +++ D  G  F    V   E   L++
Subjt:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD

Query:  RVAEIHGSFSLAVAHEF
        R   +HGSF    A EF
Subjt:  RVAEIHGSFSLAVAHEF

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-1739.32Show/hide
Query:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD
        DS  H   +V+PSYGGW++ R I LHLW    F+ IG+  GGF   A+    +   +D  IK+R NY GF+P  +++ D  G  F    V   E   L++
Subjt:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD

Query:  RVAEIHGSFSLAVAHEF
        R   +HGSF    A EF
Subjt:  RVAEIHGSFSLAVAHEF

TYK01560.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1955.42Show/hide
Query:  VPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQE
        VPSYGGW+K+RN   HLW  E+FK +G+ L GF  Y + NS LIDCV+V IK++ NYCGF+P E  L+D    F  QV S QE
Subjt:  VPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQE

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-1739.32Show/hide
Query:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD
        DS  H   +V+PSYGGW++ R I LHLW    F+ IG+  GGF   A+    +   +D  IK+R NY GF+P  +++ D  G  F    V   E   L++
Subjt:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD

Query:  RVAEIHGSFSLAVAHEF
        R   +HGSF    A EF
Subjt:  RVAEIHGSFSLAVAHEF

XP_022149859.1 uncharacterized protein LOC111018186 [Momordica charantia]8.7e-3451.49Show/hide
Query:  PSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQEGNLLMDRVAEIHGSFSLA
        PSYG WVKIRNI LHLW L  FKAIGN LGGF  Y + NS  I+C DV IK++ NYCGFIP E+  +DG   F+A+VVSF++   L  +   IHG FS  
Subjt:  PSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQEGNLLMDRVAEIHGSFSLA

Query:  VAHEFYKGPNDLEFCPMDIWRIEDGTQSPAVNVQ
         A  F++G  +     +D WR+E+G   P VN+Q
Subjt:  VAHEFYKGPNDLEFCPMDIWRIEDGTQSPAVNVQ

TrEMBL top hitse value%identityAlignment
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein7.2e-1839.32Show/hide
Query:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD
        DS  H   +V+PSYGGW++ R I LHLW    F+ IG+  GGF   A+    +   +D  IK+R NY GF+P  +++ D  G  F    V   E   L++
Subjt:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD

Query:  RVAEIHGSFSLAVAHEF
        R   +HGSF    A EF
Subjt:  RVAEIHGSFSLAVAHEF

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein7.2e-1839.32Show/hide
Query:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD
        DS  H   +V+PSYGGW++ R I LHLW    F+ IG+  GGF   A+    +   +D  IK+R NY GF+P  +++ D  G  F    V   E   L++
Subjt:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD

Query:  RVAEIHGSFSLAVAHEF
        R   +HGSF    A EF
Subjt:  RVAEIHGSFSLAVAHEF

A0A5D3BR42 LINE-1 retrotransposable element ORF2 protein7.7e-2055.42Show/hide
Query:  VPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQE
        VPSYGGW+K+RN   HLW  E+FK +G+ L GF  Y + NS LIDCV+V IK++ NYCGF+P E  L+D    F  QV S QE
Subjt:  VPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQE

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein7.2e-1839.32Show/hide
Query:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD
        DS  H   +V+PSYGGW++ R I LHLW    F+ IG+  GGF   A+    +   +D  IK+R NY GF+P  +++ D  G  F    V   E   L++
Subjt:  DSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDG-GRVFKAQVVSFQEGNLLMD

Query:  RVAEIHGSFSLAVAHEF
        R   +HGSF    A EF
Subjt:  RVAEIHGSFSLAVAHEF

A0A6J1D6X4 uncharacterized protein LOC1110181864.2e-3451.49Show/hide
Query:  PSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQEGNLLMDRVAEIHGSFSLA
        PSYG WVKIRNI LHLW L  FKAIGN LGGF  Y + NS  I+C DV IK++ NYCGFIP E+  +DG   F+A+VVSF++   L  +   IHG FS  
Subjt:  PSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQEGNLLMDRVAEIHGSFSLA

Query:  VAHEFYKGPNDLEFCPMDIWRIEDGTQSPAVNVQ
         A  F++G  +     +D WR+E+G   P VN+Q
Subjt:  VAHEFYKGPNDLEFCPMDIWRIEDGTQSPAVNVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGCCAGAAGCACGAAATAATTAATGTGGTTCCATCCTATGGGGGATGGGTTAAGATTAGAAACATCCATCTTCATTTATGGCAGCTGGAAGTGTTTAAAGCGAT
AGGGAATTGTCTTGGGGGCTTCGAGGGATACGCTGAAGGAAATTCAATGCTCATTGATTGTGTGGACGTGACCATCAAAATAAGAGAGAATTATTGTGGTTTCATCCCTA
CGGAGGTGGTGCTTCTTGACGGTGGGAGGGTGTTCAAAGCGCAAGTTGTTTCTTTCCAAGAAGGTAACTTACTCATGGATAGGGTGGCCGAAATCCATGGAAGCTTCTCT
CTGGCGGTGGCTCACGAATTTTACAAAGGGCCGAATGACCTTGAGTTTTGCCCAATGGATATTTGGAGGATAGAAGATGGAACCCAAAGTCCAGCGGTTAACGTTCAGAC
CTTATCCTCAGACATGTCACCATCAGGTACATTTTCAGGAAAAGATAAAGTAGATTTTGAATTATACCGCCAAAATTATTTGGTCTTACCAGGTGAATCAGATGGGCCCA
CTAAAGACAAAGACCCGTTGGAGGAAGAAAAAGCCCACGAGAAGAGAGAGGAATGTACCGGTGAAAAAACCCACAGGAGAAAAGGGAAAGAACCGATAGATGGGGAATCG
AGCCAACAGAAAAGCCCACAACTTAAAACGAAAAAGCAAAAAGGTATTACCTTTGCGAAGGAAGCCCAAGTTGTCACGATTCTTAAACAAGGTAGAGCCCAATCCACATC
TAAAGATGGTGATTTACATCGTGACATGGACGAAATAACCTTTGGTGTTGATGACGACTTTGGCTCGGTTATCTCCATGTCCAGTCCTGATAGTAGATCTCCGTGCGAGT
ATAAGGAGAATCTAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGCCAGAAGCACGAAATAATTAATGTGGTTCCATCCTATGGGGGATGGGTTAAGATTAGAAACATCCATCTTCATTTATGGCAGCTGGAAGTGTTTAAAGCGAT
AGGGAATTGTCTTGGGGGCTTCGAGGGATACGCTGAAGGAAATTCAATGCTCATTGATTGTGTGGACGTGACCATCAAAATAAGAGAGAATTATTGTGGTTTCATCCCTA
CGGAGGTGGTGCTTCTTGACGGTGGGAGGGTGTTCAAAGCGCAAGTTGTTTCTTTCCAAGAAGGTAACTTACTCATGGATAGGGTGGCCGAAATCCATGGAAGCTTCTCT
CTGGCGGTGGCTCACGAATTTTACAAAGGGCCGAATGACCTTGAGTTTTGCCCAATGGATATTTGGAGGATAGAAGATGGAACCCAAAGTCCAGCGGTTAACGTTCAGAC
CTTATCCTCAGACATGTCACCATCAGGTACATTTTCAGGAAAAGATAAAGTAGATTTTGAATTATACCGCCAAAATTATTTGGTCTTACCAGGTGAATCAGATGGGCCCA
CTAAAGACAAAGACCCGTTGGAGGAAGAAAAAGCCCACGAGAAGAGAGAGGAATGTACCGGTGAAAAAACCCACAGGAGAAAAGGGAAAGAACCGATAGATGGGGAATCG
AGCCAACAGAAAAGCCCACAACTTAAAACGAAAAAGCAAAAAGGTATTACCTTTGCGAAGGAAGCCCAAGTTGTCACGATTCTTAAACAAGGTAGAGCCCAATCCACATC
TAAAGATGGTGATTTACATCGTGACATGGACGAAATAACCTTTGGTGTTGATGACGACTTTGGCTCGGTTATCTCCATGTCCAGTCCTGATAGTAGATCTCCGTGCGAGT
ATAAGGAGAATCTAGATTAG
Protein sequenceShow/hide protein sequence
MDSQKHEIINVVPSYGGWVKIRNIHLHLWQLEVFKAIGNCLGGFEGYAEGNSMLIDCVDVTIKIRENYCGFIPTEVVLLDGGRVFKAQVVSFQEGNLLMDRVAEIHGSFS
LAVAHEFYKGPNDLEFCPMDIWRIEDGTQSPAVNVQTLSSDMSPSGTFSGKDKVDFELYRQNYLVLPGESDGPTKDKDPLEEEKAHEKREECTGEKTHRRKGKEPIDGES
SQQKSPQLKTKKQKGITFAKEAQVVTILKQGRAQSTSKDGDLHRDMDEITFGVDDDFGSVISMSSPDSRSPCEYKENLD