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Lag0006227 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006227
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:39647565..39648031
RNA-Seq ExpressionLag0006227
SyntenyLag0006227
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBP1983181.1 ribonuclease HI [Paenibacillus sepulcri]4.9e-0960Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR
        M K KFYVV+VGR PG+YTSW +C NQ+NQF  A +KS+ T A  E AF+
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR

REK68314.1 ribonuclease H [Cohnella sp.]8.4e-0960Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR
        M KPK+YVV+ GRNPGIY SW EC  Q+ +F GA +KS+ + AE E AFR
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR

RYR74402.1 hypothetical protein Ahy_A02g009104 [Arachis hypogaea]6.4e-0958.82Show/hide
Query:  KPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFV
        K K+YVVF+GR PGIY+SW  CH+QVN+F G +HKSY T  E   AF +F+
Subjt:  KPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFV

WP_019007846.1 ribonuclease H family protein [Cohnella laeviribosi]8.4e-0960Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR
        M KPK+YVV+ GRNPGIY SW EC  Q+ +F GA +KS+ + AE E AFR
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR

XP_042404609.1 uncharacterized protein LOC121994740 [Zingiber officinale]8.4e-0963.27Show/hide
Query:  KFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFV
        K YVVFVGRNPGIY SW E HN+VN+F GA+HKSY +  E E A+  F+
Subjt:  KFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFV

TrEMBL top hitse value%identityAlignment
A0A061P172 Ribonuclease H1.5e-0840.74Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNV
        M K K+YVV+ GR PGIYT+W EC ++V  F+GA  KSY T  E + AF+      SG++ +    +  PTR    N  ++
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNV

A0A445EFW3 Cauli_VI domain-containing protein3.1e-0958.82Show/hide
Query:  KPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFV
        K K+YVVF+GR PGIY+SW  CH+QVN+F G +HKSY T  E   AF +F+
Subjt:  KPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFV

A0A4P8XP99 Ribonuclease H4.1e-0943.9Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNVG
        M K KFYVV+VG  PGIYTSW EC  QVN   GA +K++ T AE E A+     G  G++    K +A  +    T G   G
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNVG

A0A4V3D662 Ribonuclease H6.9e-0938.3Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNVGKCYSLSRMFVGN
        M K K+Y V+ GR PGIYTSW +C  Q+  + GA  KS+ T  E E AF+     TS RA +  K     ++   TN   + K  S+     GN
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNVGKCYSLSRMFVGN

A0A5J5GH46 Ribonuclease H2.6e-0852.38Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR-----RFVMGTSG
        M K K+YVV+VGR PGIY SW EC  Q +QF GA +KSY +  E E A+R     R+  G+SG
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR-----RFVMGTSG

SwissProt top hitse value%identityAlignment
Q04740 Ribonuclease H6.5e-0442.86Show/hide
Query:  MMGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGT
        M  +  FY V  GR  GIY +W EC NQV+ + GA++K + +
Subjt:  MMGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGT

Q07762 Ribonuclease H3.7e-0757.14Show/hide
Query:  KPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAE
        KP FYVV VGR  GIY++W +C  QV  F GAV+KS+ T +E
Subjt:  KPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAE

Q9KEI9 Ribonuclease H2.5e-0856Show/hide
Query:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR
        M K K+YVV+ GR PGIYTSW  C  QV  + GA  KSY +  E E AFR
Subjt:  MGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGGAAGCCGAAATTCTATGTCGTGTTCGTTGGGCGTAACCCAGGAATTTACACTTCTTGGGTTGAATGCCACAACCAAGTAAACCAGTTTAGGGGAGCAGTACA
CAAGTCCTATGGAACATGTGCAGAAGTAGAGTATGCATTTAGGCGTTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATAAACATGAAGCGTGTCCTACCCGAC
TCGTAAGGACAAATGGTCAAAATGTGGGAAAATGTTATAGTCTGAGTAGGATGTTTGTAGGGAACAAGTGCATTGCAAATGGATTCTGTAACACCACAAGAGCTTGTTTC
CATACTATCCATAATGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGGGAAGCCGAAATTCTATGTCGTGTTCGTTGGGCGTAACCCAGGAATTTACACTTCTTGGGTTGAATGCCACAACCAAGTAAACCAGTTTAGGGGAGCAGTACA
CAAGTCCTATGGAACATGTGCAGAAGTAGAGTATGCATTTAGGCGTTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATAAACATGAAGCGTGTCCTACCCGAC
TCGTAAGGACAAATGGTCAAAATGTGGGAAAATGTTATAGTCTGAGTAGGATGTTTGTAGGGAACAAGTGCATTGCAAATGGATTCTGTAACACCACAAGAGCTTGTTTC
CATACTATCCATAATGGCTGA
Protein sequenceShow/hide protein sequence
MMGKPKFYVVFVGRNPGIYTSWVECHNQVNQFRGAVHKSYGTCAEVEYAFRRFVMGTSGRANLMDKHEACPTRLVRTNGQNVGKCYSLSRMFVGNKCIANGFCNTTRACF
HTIHNG