; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006228 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006228
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr6:39649572..39650103
RNA-Seq ExpressionLag0006228
SyntenyLag0006228
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-2554.81Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        MA + +  KH WT+ EEAKLVE LVELV  GGWR DNGTFR GY  +LQRM+ +K+P   I  + TID + H AAK LL+K FP+Y++L+ VFG D A+G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

Query:  SRCD
        +  +
Subjt:  SRCD

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-2340.56Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKF-----------------------------
        M+ +++ P+H+WTR EE  LVE L+ELV  GGW+ DNGTFRPGY A+L RM+ +K+P C++ +T+ ID +                              
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKF-----------------------------

Query:  --------------HSAAKDLLNKPFPHYEELTIVFGKDQASG
                      H AAK LLNKPFP+Y+ELT VFG+D+A+G
Subjt:  --------------HSAAKDLLNKPFPHYEELTIVFGKDQASG

KAA0054147.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-2352.17Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPT---------CRINSTSTIDS--KFHSAAKDLLNKPFPHYEEL
        M  + + PKH WT+ EEA LVE LVELV+ GGWR DNGTFRPGY  +L RM+  KIP          C +      D   K H AAK LLNK F HY+EL
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPT---------CRINSTSTIDS--KFHSAAKDLLNKPFPHYEEL

Query:  TIVFGKDQASGSRCD
        + VFGKD+A+G R +
Subjt:  TIVFGKDQASGSRCD

TYK24214.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-2349.02Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        MA + + P H+WT+ E+A  VE LVELV+  GWR DNGTFRP YH++L RM+ QK+P    +ST T++   H   K LLN+ FPHY++ + +FG+D+ +G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

Query:  SR
         R
Subjt:  SR

TYK26893.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-2350Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        M+ + + P+H+WT+ EE+ L++ L+ELV  GGW+ DNGTF+PGY A+L  M+ +K+P CR+ +T++     H  AK LL+KPFP+Y+ELT VFG+D+A+G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

TrEMBL top hitse value%identityAlignment
A0A5A7UHV9 Retrotransposon protein2.1e-2352.17Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPT---------CRINSTSTIDS--KFHSAAKDLLNKPFPHYEEL
        M  + + PKH WT+ EEA LVE LVELV+ GGWR DNGTFRPGY  +L RM+  KIP          C +      D   K H AAK LLNK F HY+EL
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPT---------CRINSTSTIDS--KFHSAAKDLLNKPFPHYEEL

Query:  TIVFGKDQASGSRCD
        + VFGKD+A+G R +
Subjt:  TIVFGKDQASGSRCD

A0A5A7V4P8 Retrotransposon protein2.7e-2353Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        M+ +++ P+H+WT+ EE  LVE L+ELV  GGW+ DNGTFRP Y A+L RM+ +K+P C          + H AAK LLNKPFP+Y+ELT VFG+D+A+G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

A0A5D3BZU3 Retrotransposon protein7.7e-2654.81Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        MA + +  KH WT+ EEAKLVE LVELV  GGWR DNGTFR GY  +LQRM+ +K+P   I  + TID + H AAK LL+K FP+Y++L+ VFG D A+G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

Query:  SRCD
        +  +
Subjt:  SRCD

A0A5D3DKT3 Retrotransposon protein2.1e-2349.02Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        MA + + P H+WT+ E+A  VE LVELV+  GWR DNGTFRP YH++L RM+ QK+P    +ST T++   H   K LLN+ FPHY++ + +FG+D+ +G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

Query:  SR
         R
Subjt:  SR

A0A5D3DTF3 Retrotransposon protein1.6e-2350Show/hide
Query:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG
        M+ + + P+H+WT+ EE+ L++ L+ELV  GGW+ DNGTF+PGY A+L  M+ +K+P CR+ +T++     H  AK LL+KPFP+Y+ELT VFG+D+A+G
Subjt:  MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAATTGGTTGAAAGCCTCGTGGAGCTTGTACATGAAGGTGGATGGCGAGGTGATAA
TGGAACGTTCAGACCTGGCTACCATGCACGACTACAGCGTATGCTGAAACAAAAAATCCCAACATGCAGGATCAATTCAACATCAACAATTGACTCTAAGTTCCACTCAG
CTGCAAAGGATCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTTGGCAAAGATCAGGCTAGTGGATCGAGGTGTGATGTCCTAGGAACAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAATTGGTTGAAAGCCTCGTGGAGCTTGTACATGAAGGTGGATGGCGAGGTGATAA
TGGAACGTTCAGACCTGGCTACCATGCACGACTACAGCGTATGCTGAAACAAAAAATCCCAACATGCAGGATCAATTCAACATCAACAATTGACTCTAAGTTCCACTCAG
CTGCAAAGGATCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTTGGCAAAGATCAGGCTAGTGGATCGAGGTGTGATGTCCTAGGAACAAGCTGA
Protein sequenceShow/hide protein sequence
MAGADKQPKHIWTRLEEAKLVESLVELVHEGGWRGDNGTFRPGYHARLQRMLKQKIPTCRINSTSTIDSKFHSAAKDLLNKPFPHYEELTIVFGKDQASGSRCDVLGTS