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Lag0006231 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006231
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:39671999..39672639
RNA-Seq ExpressionLag0006231
SyntenyLag0006231
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.2e-1741.75Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+++   W  +K T++E E V    G   L   ++ LCVV K+ +SKR++ EA R+VM++ WR H +TR E  G N++ I F+S  EK RV+S+GPW F+
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPL
        + L
Subjt:  RPL

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]2.3e-1539.81Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+++   W ++ LT E+ E +   +    +   ++    VGK+ +SKR++VEAFR+VM++ W+ H +T IETAG NL+ I F+S  EK RV+++GPW+F+
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPL
          L
Subjt:  RPL

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]6.4e-1843.69Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+D+   W ++ L  EE + +        L V ++ LC VGK+  SKR+ VEAF +VM+  W+ H +TRIETAG N++ I F++  EK+RV S GPW FD
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPL
        + L
Subjt:  RPL

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]1.7e-1539.42Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+++   W ++ LT+EE E          L   ++ LC VGK+ +SKR++ +A  +VM+  W+ H +TRIE AG N++ I F++  EK RV+S+GPW FD
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPLW
        + L+
Subjt:  RPLW

XP_042939586.1 uncharacterized protein LOC122274631 [Carya illinoinensis]1.1e-1239.05Show/hide
Query:  VIMEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWA
        ++ E+L  RW    L++EE  +++  A  S   V   ++CVVG+V S K VN EAFRN M   WR  G  R +   +  F I+F+   +K +V+S  PW 
Subjt:  VIMEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWA

Query:  FDRPL
        FDR L
Subjt:  FDRPL

TrEMBL top hitse value%identityAlignment
A0A5C7HLZ4 DUF4283 domain-containing protein1.9e-1238.24Show/hide
Query:  EDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFDR
        ++L     +  + DE++ + +   G     V  ++ C+VGKV S KRVN EAF++V+   WR +G+  IE  GEN+F + F S  E+ R+   GPW FDR
Subjt:  EDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFDR

Query:  PL
         L
Subjt:  PL

A0A6J1D765 uncharacterized protein LOC1110179021.5e-1741.75Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+++   W  +K T++E E V    G   L   ++ LCVV K+ +SKR++ EA R+VM++ WR H +TR E  G N++ I F+S  EK RV+S+GPW F+
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPL
        + L
Subjt:  RPL

A0A6J1DP89 uncharacterized protein LOC1110229321.1e-1539.81Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+++   W ++ LT E+ E +   +    +   ++    VGK+ +SKR++VEAFR+VM++ W+ H +T IETAG NL+ I F+S  EK RV+++GPW+F+
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPL
          L
Subjt:  RPL

A0A6J1DVS4 uncharacterized protein LOC1110235553.1e-1843.69Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+D+   W ++ L  EE + +        L V ++ LC VGK+  SKR+ VEAF +VM+  W+ H +TRIETAG N++ I F++  EK+RV S GPW FD
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPL
        + L
Subjt:  RPL

A0A6J1DYG3 uncharacterized protein LOC1110246768.4e-1639.42Show/hide
Query:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD
        M+++   W ++ LT+EE E          L   ++ LC VGK+ +SKR++ +A  +VM+  W+ H +TRIE AG N++ I F++  EK RV+S+GPW FD
Subjt:  MEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGEKMRVMSTGPWAFD

Query:  RPLW
        + L+
Subjt:  RPLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGCGGCTGAGTTTGTGGTGGTCTGGGTTTGGGTGCGGGAGGTAGTGTTTGGAGTTCAGGTGATAATGGAAGATCTTGTCAGTAGGTGGAACTCTTGGAAGTTGAC
GGACGAGGAGGCAGAGATGGTTCGGCCAGGGGCGGGAGCATCGACTTTGCCGGTGGGATCGCTAGATCTGTGTGTGGTAGGGAAAGTGTTTTCCTCAAAGCGTGTGAATG
TGGAGGCCTTTCGGAATGTCATGAGGACAGCGTGGAGAGCTCATGGGGCAACGCGCATTGAAACTGCGGGGGAGAATTTGTTTGCTATCCAATTTCGGTCCAAGGGGGAG
AAAATGCGAGTGATGTCTACGGGTCCGTGGGCCTTTGATCGTCCCTTGTGGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGCGGCTGAGTTTGTGGTGGTCTGGGTTTGGGTGCGGGAGGTAGTGTTTGGAGTTCAGGTGATAATGGAAGATCTTGTCAGTAGGTGGAACTCTTGGAAGTTGAC
GGACGAGGAGGCAGAGATGGTTCGGCCAGGGGCGGGAGCATCGACTTTGCCGGTGGGATCGCTAGATCTGTGTGTGGTAGGGAAAGTGTTTTCCTCAAAGCGTGTGAATG
TGGAGGCCTTTCGGAATGTCATGAGGACAGCGTGGAGAGCTCATGGGGCAACGCGCATTGAAACTGCGGGGGAGAATTTGTTTGCTATCCAATTTCGGTCCAAGGGGGAG
AAAATGCGAGTGATGTCTACGGGTCCGTGGGCCTTTGATCGTCCCTTGTGGTCCTGA
Protein sequenceShow/hide protein sequence
MRAAEFVVVWVWVREVVFGVQVIMEDLVSRWNSWKLTDEEAEMVRPGAGASTLPVGSLDLCVVGKVFSSKRVNVEAFRNVMRTAWRAHGATRIETAGENLFAIQFRSKGE
KMRVMSTGPWAFDRPLWS