CuGenDBv2

Gene ID	Lag0006232
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA ligase
Genome location	chr6:39690331..39692613
RNA-Seq Expression	Lag0006232
Synteny	Lag0006232
Gene Ontology terms	GO:0006302 - double-strand break repair (biological process) GO:0034645 - cellular macromolecule biosynthetic process (biological process) GO:0005634 - nucleus (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003909 - DNA ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022149864.1 DNA ligase 4 isoform X3 [Momordica charantia]

3.1e-92

66.08

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        +DSETP AS++     ENQKISSPS  YKD+GRN+AASGQH+L +STERS G KRG+  ARSMQKGK  VEQVRRARARTAKGPAKISEV+SD SD+ DE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS
        KTNAET NI T  SEN    E   LEN                  ER  +KKRGR  T     R+ QKGKAGVEQ +RTRAR AKGS KIG VESDSSD+
Subjt:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS

Query:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL
        T +K  AE  G++K NIGTV   N+ T+EF   E+ D   KGK IEQ D+AE KSNV     PE+ IS RYN Q  E+SEKLEVMTDPLQAMLLDMVPSL
Subjt:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL

Query:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD
        GMSETKSSSTVLEEKQ PV NNSEP KKKVSYKDVASELLKD
Subjt:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD

XP_038889084.1 DNA ligase 4 isoform X1 [Benincasa hispida]

5.9e-99

70.22

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        MD E P A    S++I+NQ+I SPS+ YKD+GRN+AASGQH LSYSTERS G KR RPAARSMQKGKSGV+QVR  R RTAKGPAKISEV+SD SD+TDE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE
        KTNAET N+ TL SE SEK EFK LENE  + KKRGRPT  NTQKGKAG + VRRTRARI KGS KIGD+ES S+DST EK   +E   +K       EE
Subjt:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE

Query:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS
        N+K DEF ML D D KQKGKAIE+   A+  SNV FGK+PEV ISERY+++D EK EKLE+M DPL+AMLLDMVPSLGMS +KSSSTV+EEK+ PV++NS
Subjt:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS

Query:  EPAKKKVSYKDVASELLKD
        EPAKKKVSYKDVASELLKD
Subjt:  EPAKKKVSYKDVASELLKD

XP_038889085.1 DNA ligase 4 isoform X2 [Benincasa hispida]

5.9e-99

70.22

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        MD E P A    S++I+NQ+I SPS+ YKD+GRN+AASGQH LSYSTERS G KR RPAARSMQKGKSGV+QVR  R RTAKGPAKISEV+SD SD+TDE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE
        KTNAET N+ TL SE SEK EFK LENE  + KKRGRPT  NTQKGKAG + VRRTRARI KGS KIGD+ES S+DST EK   +E   +K       EE
Subjt:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE

Query:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS
        N+K DEF ML D D KQKGKAIE+   A+  SNV FGK+PEV ISERY+++D EK EKLE+M DPL+AMLLDMVPSLGMS +KSSSTV+EEK+ PV++NS
Subjt:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS

Query:  EPAKKKVSYKDVASELLKD
        EPAKKKVSYKDVASELLKD
Subjt:  EPAKKKVSYKDVASELLKD

XP_038889086.1 DNA ligase 4 isoform X3 [Benincasa hispida]

5.9e-99

70.22

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        MD E P A    S++I+NQ+I SPS+ YKD+GRN+AASGQH LSYSTERS G KR RPAARSMQKGKSGV+QVR  R RTAKGPAKISEV+SD SD+TDE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE
        KTNAET N+ TL SE SEK EFK LENE  + KKRGRPT  NTQKGKAG + VRRTRARI KGS KIGD+ES S+DST EK   +E   +K       EE
Subjt:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE

Query:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS
        N+K DEF ML D D KQKGKAIE+   A+  SNV FGK+PEV ISERY+++D EK EKLE+M DPL+AMLLDMVPSLGMS +KSSSTV+EEK+ PV++NS
Subjt:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS

Query:  EPAKKKVSYKDVASELLKD
        EPAKKKVSYKDVASELLKD
Subjt:  EPAKKKVSYKDVASELLKD

XP_038889088.1 DNA ligase 4 isoform X4 [Benincasa hispida]

5.9e-99

70.22

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        MD E P A    S++I+NQ+I SPS+ YKD+GRN+AASGQH LSYSTERS G KR RPAARSMQKGKSGV+QVR  R RTAKGPAKISEV+SD SD+TDE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE
        KTNAET N+ TL SE SEK EFK LENE  + KKRGRPT  NTQKGKAG + VRRTRARI KGS KIGD+ES S+DST EK   +E   +K       EE
Subjt:  KTNAETGNIRTLNSENSEK-EFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEE

Query:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS
        N+K DEF ML D D KQKGKAIE+   A+  SNV FGK+PEV ISERY+++D EK EKLE+M DPL+AMLLDMVPSLGMS +KSSSTV+EEK+ PV++NS
Subjt:  NAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNS

Query:  EPAKKKVSYKDVASELLKD
        EPAKKKVSYKDVASELLKD
Subjt:  EPAKKKVSYKDVASELLKD

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D6X8 DNA ligase

1.5e-92

66.08

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        +DSETP AS++     ENQKISSPS  YKD+GRN+AASGQH+L +STERS G KRG+  ARSMQKGK  VEQVRRARARTAKGPAKISEV+SD SD+ DE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS
        KTNAET NI T  SEN    E   LEN                  ER  +KKRGR  T     R+ QKGKAGVEQ +RTRAR AKGS KIG VESDSSD+
Subjt:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS

Query:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL
        T +K  AE  G++K NIGTV   N+ T+EF   E+ D   KGK IEQ D+AE KSNV     PE+ IS RYN Q  E+SEKLEVMTDPLQAMLLDMVPSL
Subjt:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL

Query:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD
        GMSETKSSSTVLEEKQ PV NNSEP KKKVSYKDVASELLKD
Subjt:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD

A0A6J1D7W8 DNA ligase

1.5e-92

66.08

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        +DSETP AS++     ENQKISSPS  YKD+GRN+AASGQH+L +STERS G KRG+  ARSMQKGK  VEQVRRARARTAKGPAKISEV+SD SD+ DE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS
        KTNAET NI T  SEN    E   LEN                  ER  +KKRGR  T     R+ QKGKAGVEQ +RTRAR AKGS KIG VESDSSD+
Subjt:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS

Query:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL
        T +K  AE  G++K NIGTV   N+ T+EF   E+ D   KGK IEQ D+AE KSNV     PE+ IS RYN Q  E+SEKLEVMTDPLQAMLLDMVPSL
Subjt:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL

Query:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD
        GMSETKSSSTVLEEKQ PV NNSEP KKKVSYKDVASELLKD
Subjt:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD

A0A6J1D8A6 DNA ligase

1.5e-92

66.08

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        +DSETP AS++     ENQKISSPS  YKD+GRN+AASGQH+L +STERS G KRG+  ARSMQKGK  VEQVRRARARTAKGPAKISEV+SD SD+ DE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS
        KTNAET NI T  SEN    E   LEN                  ER  +KKRGR  T     R+ QKGKAGVEQ +RTRAR AKGS KIG VESDSSD+
Subjt:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS

Query:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL
        T +K  AE  G++K NIGTV   N+ T+EF   E+ D   KGK IEQ D+AE KSNV     PE+ IS RYN Q  E+SEKLEVMTDPLQAMLLDMVPSL
Subjt:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL

Query:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD
        GMSETKSSSTVLEEKQ PV NNSEP KKKVSYKDVASELLKD
Subjt:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD

A0A6J1D962 DNA ligase

1.5e-92

66.08

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        +DSETP AS++     ENQKISSPS  YKD+GRN+AASGQH+L +STERS G KRG+  ARSMQKGK  VEQVRRARARTAKGPAKISEV+SD SD+ DE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS
        KTNAET NI T  SEN    E   LEN                  ER  +KKRGR  T     R+ QKGKAGVEQ +RTRAR AKGS KIG VESDSSD+
Subjt:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS

Query:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL
        T +K  AE  G++K NIGTV   N+ T+EF   E+ D   KGK IEQ D+AE KSNV     PE+ IS RYN Q  E+SEKLEVMTDPLQAMLLDMVPSL
Subjt:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL

Query:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD
        GMSETKSSSTVLEEKQ PV NNSEP KKKVSYKDVASELLKD
Subjt:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD

A0A6J1D9Q4 DNA ligase IV

1.5e-92

66.08

Show/hide

Query:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE
        +DSETP AS++     ENQKISSPS  YKD+GRN+AASGQH+L +STERS G KRG+  ARSMQKGK  VEQVRRARARTAKGPAKISEV+SD SD+ DE
Subjt:  MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDE

Query:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS
        KTNAET NI T  SEN    E   LEN                  ER  +KKRGR  T     R+ QKGKAGVEQ +RTRAR AKGS KIG VESDSSD+
Subjt:  KTNAETGNIRTLNSEN-SEKEFKMLEN------------------ERPDKKKRGRPTT-----RNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDS

Query:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL
        T +K  AE  G++K NIGTV   N+ T+EF   E+ D   KGK IEQ D+AE KSNV     PE+ IS RYN Q  E+SEKLEVMTDPLQAMLLDMVPSL
Subjt:  TGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSL

Query:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD
        GMSETKSSSTVLEEKQ PV NNSEP KKKVSYKDVASELLKD
Subjt:  GMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKD

SwissProt top hits

e value

%identity

Alignment

Q7X7E9 Putative DNA ligase 4

1.4e-05

25.8

Show/hide

Query:  NDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTD---EKTNAETGNIRTLNSENSEKEFKMLENERPD
        N+ A   H+      + +  KRGRP++ + +  K     VRR RAR     AKI +V+ + SDH +   +    +T NI  +  ++ +K+       R  
Subjt:  NDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTD---EKTNAETGNIRTLNSENSEKEFKMLENERPD

Query:  KKKRGRP-------TTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSD-STGEKPKAE------------------------ETGMDKGNIGTVSE
        + +RG+         +  +  G+ G +  R     I+K       +E DSSD   G  P A                         ETG D   +   ++
Subjt:  KKKRGRP-------TTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSD-STGEKPKAE------------------------ETGMDKGNIGTVSE

Query:  ENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPK----SNVQFGKLPEVNISERYNYQDTEKS------EKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVL
          +K +E    +D++    G  +  +D  EPK    S  +    P+   ++    +DT ++      EK+E M DPL AMLLDM+PSLG  +T   + V 
Subjt:  ENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPK----SNVQFGKLPEVNISERYNYQDTEKS------EKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVL

Query:  EEKQ-------------------------------PPVHNNSE---------------PAKKKVSYKDVASELLKD
        E K                                P  H  S                P KKKVSYKDVA  LLKD
Subjt:  EEKQ-------------------------------PPVHNNSE---------------PAKKKVSYKDVASELLKD

Q9LL84 DNA ligase 4

1.4e-07

25.68

Show/hide

Query:  NKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDEKTNAETGNIRTLNSENSEKEFKMLENERPDKKKRGRPTTRNTQKGKAGVEQV
        + RGR   R++++G+S    ++R + R  K P+KIS  +++ SD ++EK +    +I               E +   + +R     +  ++GK+ V Q 
Subjt:  NKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDEKTNAETGNIRTLNSENSEKEFKMLENERPDKKKRGRPTTRNTQKGKAGVEQV

Query:  RRT-RARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQD
        +R  R+R  K + KIG  ESD +D             ++GN    S EN +T E ++ +  + +Q+   +   +  +   N +                +
Subjt:  RRT-RARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQD

Query:  TEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSS-TVLEEKQPPVHNNSEPA----------------------------KKKVSYKDVASELLKD
         +  EKL++  DPLQAML+ M P      T++S+ T  E ++  V    E +                            KKKVSY+DVA ELLKD
Subjt:  TEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSS-TVLEEKQPPVHNNSEPA----------------------------KKKVSYKDVASELLKD

Arabidopsis top hits

e value

%identity

Alignment

AT5G57160.1 DNA ligase IV

1.0e-08

25.68

Show/hide

Query:  NKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDEKTNAETGNIRTLNSENSEKEFKMLENERPDKKKRGRPTTRNTQKGKAGVEQV
        + RGR   R++++G+S    ++R + R  K P+KIS  +++ SD ++EK +    +I               E +   + +R     +  ++GK+ V Q 
Subjt:  NKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDEKTNAETGNIRTLNSENSEKEFKMLENERPDKKKRGRPTTRNTQKGKAGVEQV

Query:  RRT-RARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQD
        +R  R+R  K + KIG  ESD +D             ++GN    S EN +T E ++ +  + +Q+   +   +  +   N +                +
Subjt:  RRT-RARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKAIEQIDVAEPKSNVQFGKLPEVNISERYNYQD

Query:  TEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSS-TVLEEKQPPVHNNSEPA----------------------------KKKVSYKDVASELLKD
         +  EKL++  DPLQAML+ M P      T++S+ T  E ++  V    E +                            KKKVSY+DVA ELLKD
Subjt:  TEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSS-TVLEEKQPPVHNNSEPA----------------------------KKKVSYKDVASELLKD

Sequences

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CDS sequence

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ATGGATTCTGAGACACCATGGGCCTCGAAACATGTCTCGAAACATATAGAAAACCAGAAAATTTCCTCTCCTTCCAAGGTGTATAAAGATCGAGGAAGAAACGATGCTGC
TTCAGGACAACACATTCTCTCATATTCAACTGAGAGATCTAGTGGAAACAAAAGAGGAAGGCCTGCTGCAAGGAGTATGCAGAAAGGGAAATCGGGTGTCGAACAAGTTC
GAAGAGCTCGGGCACGAACAGCCAAGGGGCCTGCAAAAATAAGTGAAGTTGATTCAGACATCAGTGACCATACTGATGAAAAAACGAATGCAGAAACTGGAAATATTAGA
ACACTAAACAGTGAAAACTCAGAAAAGGAGTTTAAAATGCTAGAAAATGAGAGACCCGACAAGAAGAAAAGAGGAAGACCTACTACAAGGAACACACAGAAAGGGAAAGC
AGGGGTCGAACAAGTTCGAAGAACTCGGGCACGTATAGCCAAGGGGTCAGGTAAAATAGGCGATGTTGAGTCAGACAGCAGTGACTCTACTGGTGAAAAACCAAAAGCGG
AAGAAACTGGAATGGATAAAGGAAACATTGGAACAGTAAGCGAGGAAAACGCAAAAACAGATGAGTTCAATATGCTAGAAGACCGTGATTGGAAACAAAAAGGCAAGGCC
ATTGAACAAATTGATGTTGCAGAACCCAAATCTAATGTTCAGTTTGGTAAACTTCCAGAAGTCAATATATCTGAAAGGTATAATTACCAAGACACTGAAAAATCTGAAAA
GCTGGAAGTCATGACCGATCCACTTCAAGCTATGTTATTAGATATGGTTCCAAGTCTTGGAATGAGTGAAACTAAAAGTAGTAGTACTGTTCTTGAGGAGAAGCAACCAC
CAGTACACAACAATTCTGAGCCAGCTAAGAAGAAAGTCAGCTACAAGGACGTTGCCAGTGAACTGCTTAAGGATTGTTACAAGTTAGAAGGCCACCTTTCCAGCAAAAAG
CCATGTCCTCCAACAAAAATTTCAGCATCAAATGTAGCTGAAAATTCAGGAGCCTCAGCAGAAGCAGATGTCTTTGGAGTATCAAGTTCAAGACCTGCAGTGACAGCAGT
AGTTAACCCACTTTATGAATCCTGGATAGCTATTGATCAGCTTCTTCTTAGCTGGCTATATAATTAA

mRNA sequence

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Protein sequence

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MDSETPWASKHVSKHIENQKISSPSKVYKDRGRNDAASGQHILSYSTERSSGNKRGRPAARSMQKGKSGVEQVRRARARTAKGPAKISEVDSDISDHTDEKTNAETGNIR
TLNSENSEKEFKMLENERPDKKKRGRPTTRNTQKGKAGVEQVRRTRARIAKGSGKIGDVESDSSDSTGEKPKAEETGMDKGNIGTVSEENAKTDEFNMLEDRDWKQKGKA
IEQIDVAEPKSNVQFGKLPEVNISERYNYQDTEKSEKLEVMTDPLQAMLLDMVPSLGMSETKSSSTVLEEKQPPVHNNSEPAKKKVSYKDVASELLKDCYKLEGHLSSKK
PCPPTKISASNVAENSGASAEADVFGVSSSRPAVTAVVNPLYESWIAIDQLLLSWLYN

Lag0006232 (gene) of Sponge gourd (AG-4) v1 genome