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Lag0006272 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006272
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-directed DNA polymerase reverse transcriptase family protein
Genome locationchr6:40374024..40374631
RNA-Seq ExpressionLag0006272
SyntenyLag0006272
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]2.8e-3256.48Show/hide
Query:  EVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLI
        E  +HW SWKRLC +KE+GG+ F+++  FNQ MLAKQSW+I+KNPNSLL   L+G  F++ NF+ A+LG++PS  WRSI W +ELF+KG++WR+GN   +
Subjt:  EVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLI

Query:  DIEKDPWI
         I  DPWI
Subjt:  DIEKDPWI

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]5.1e-3448.25Show/hide
Query:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG
        G+  ++  +HW SWK LC  K+ GGM FR+I+ FNQ MLAKQSWRIL++P+SLL +TL+G  F+  +FL AKLG  PS  WRSI W R+LF KG +W+VG
Subjt:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG

Query:  NEKLIDIEKDPWI-QNRELSPYVTKDNLKGLRVSSLLDDNNRW
        N   I++  DPW+ ++   SP  T  +++   V+ L++   RW
Subjt:  NEKLIDIEKDPWI-QNRELSPYVTKDNLKGLRVSSLLDDNNRW

XP_030498102.1 uncharacterized protein LOC115713760 [Cannabis sativa]6.5e-2944.37Show/hide
Query:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG
        G  +D   +HW  WK LC++K  GGM FR    FNQ MLAKQ+WR+ +NPNSLL   L+   F   +FLDA LG+SPS+TW+ I W REL +KGL+++VG
Subjt:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG

Query:  NEKLIDIEKDPWIQNRELSPYVTKDNLKGLRVSSLLDDNNRW
        N   I    DPWI   +    +       + VS+ + D   W
Subjt:  NEKLIDIEKDPWIQNRELSPYVTKDNLKGLRVSSLLDDNNRW

XP_030502375.1 uncharacterized protein LOC115717530 [Cannabis sativa]1.5e-3047.41Show/hide
Query:  VHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIE
        +HW SW  LC++K  GGM FR    FNQ +LAKQ+WRI  NP+SLL   L+   F N  FL+A LG+SPS+TW+ I W REL LKGL+W+VG+ + I  +
Subjt:  VHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIE

Query:  KDPWIQ-NRELSPYVTKDNLKGLRVSSLLDDNNRW
         DPWI  +    P++ K    G+ V++L+ D  +W
Subjt:  KDPWIQ-NRELSPYVTKDNLKGLRVSSLLDDNNRW

XP_030502765.1 uncharacterized protein LOC115717936 [Cannabis sativa]1.7e-2940.12Show/hide
Query:  LLSEW-----DASSRESESLARWHIQNVNGNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDA
        LLS W      A  +E    A +  + + G+      +HW +W  LC+ K +GG+ FR    FNQ +LAKQ+WRI++ PNSLL + L+   F N NF+ +
Subjt:  LLSEW-----DASSRESESLARWHIQNVNGNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDA

Query:  KLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIEKDPWIQ-NRELSPYVTKDNLKGLRVSSLLDDNNRW
         LG++PS+TWRS+FW +EL LKGL+WRVG+   I+   D W+  N    PY  K     L V+ L+ +  +W
Subjt:  KLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIEKDPWIQ-NRELSPYVTKDNLKGLRVSSLLDDNNRW

TrEMBL top hitse value%identityAlignment
A0A1S8ACU2 Ribonuclease H-like superfamily protein7.4e-3143.36Show/hide
Query:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG
        G  +D    HW SW++LCQ K RGG+ FR+I SFNQ ++AKQSWRI+K P SL+ + LQ   F+  +FL AKLG+ PS  WRSI W R++ + G++WR+G
Subjt:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG

Query:  NEKLIDIEKDPWIQNRELSPYVTKDNL-KGLRVSSLLDDNNRW
            + I K  WI   +    ++   L     V+ L+D+N +W
Subjt:  NEKLIDIEKDPWIQNRELSPYVTKDNL-KGLRVSSLLDDNNRW

A0A6J1CV63 uncharacterized protein LOC1110146621.4e-3256.48Show/hide
Query:  EVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLI
        E  +HW SWKRLC +KE+GG+ F+++  FNQ MLAKQSW+I+KNPNSLL   L+G  F++ NF+ A+LG++PS  WRSI W +ELF+KG++WR+GN   +
Subjt:  EVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLI

Query:  DIEKDPWI
         I  DPWI
Subjt:  DIEKDPWI

A0A6J1DRA0 uncharacterized protein LOC1110224232.5e-3448.25Show/hide
Query:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG
        G+  ++  +HW SWK LC  K+ GGM FR+I+ FNQ MLAKQSWRIL++P+SLL +TL+G  F+  +FL AKLG  PS  WRSI W R+LF KG +W+VG
Subjt:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVG

Query:  NEKLIDIEKDPWI-QNRELSPYVTKDNLKGLRVSSLLDDNNRW
        N   I++  DPW+ ++   SP  T  +++   V+ L++   RW
Subjt:  NEKLIDIEKDPWI-QNRELSPYVTKDNLKGLRVSSLLDDNNRW

A0A803PQ30 Uncharacterized protein7.4e-3147.41Show/hide
Query:  VHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIE
        +HW SW  LC++K  GGM FR    FNQ +LAKQ+WRI  NP+SLL   L+   F N  FL+A LG+SPS+TW+ I W REL LKGL+W+VG+ + I  +
Subjt:  VHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIE

Query:  KDPWIQ-NRELSPYVTKDNLKGLRVSSLLDDNNRW
         DPWI  +    P++ K    G+ V++L+ D  +W
Subjt:  KDPWIQ-NRELSPYVTKDNLKGLRVSSLLDDNNRW

A0A803QH07 Uncharacterized protein2.0e-3146.31Show/hide
Query:  WHIQNVNGNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLK
        W   N NG       +HW  WK LC++K  GGM FR    FNQ +LAKQ+WRI   P+SLL   L+   F   +FLDA +G+SPS TW+SI W REL +K
Subjt:  WHIQNVNGNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLK

Query:  GLKWRVGNEKLIDIEKDPWIQNRELSPYVTKDNLKGLRVSSLLDDNNRW
        GL+++VGN   ID  KDPWI + +    V+      L VS+L++DN  W
Subjt:  GLKWRVGNEKLIDIEKDPWIQNRELSPYVTKDNLKGLRVSSLLDDNNRW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.6e-0930.89Show/hide
Query:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQG----GCFRNENFLDAKLGNSPSITWRSI-FWDRELFLKGL
        G+  ++   H + W ++C  K+ GG+  R   S N+ +++K  WR+L+  NSL    LQ     G  R+  +L  K   S S TWRSI    R++   G+
Subjt:  GNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQG----GCFRNENFLDAKLGNSPSITWRSI-FWDRELFLKGL

Query:  KWRVGNEKLIDIEKDPWIQNREL
         W  G+ + I    D W+  + L
Subjt:  KWRVGNEKLIDIEKDPWIQNREL

P93295 Uncharacterized mitochondrial protein AtMg003107.0e-1837.17Show/hide
Query:  VHWMSWKRLCQNKE-RGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDI
        + W++W++LC++KE  GG+ FR++  FNQ +LAKQS+RI+  P++LL   L+   F + + ++  +G  PS  WRSI   REL  +GL   +G+     +
Subjt:  VHWMSWKRLCQNKE-RGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDI

Query:  EKDPWIQNRELSP
          D WI +    P
Subjt:  EKDPWIQNRELSP

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.4e-1931.69Show/hide
Query:  VHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIE
        +HW +W  L   K  GG+ F++I +FN  +L KQ WR+L  P SL+ +  +   F   + L+A LG+ PS  W+SI   +E+  +G +  VGN + I I 
Subjt:  VHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDIE

Query:  KDPWIQNRELSPYVTKDNLKG---------LRVSSLLDDNNR
        +  W+ ++  S  +    +           L+VS L+D++ R
Subjt:  KDPWIQNRELSPYVTKDNLKG---------LRVSSLLDDNNR

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.9e-1937.17Show/hide
Query:  VHWMSWKRLCQNKE-RGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDI
        + W++W++LC++KE  GG+ FR++  FNQ +LAKQS+RI+  P++LL   L+   F + + ++  +G  PS  WRSI   REL  +GL   +G+     +
Subjt:  VHWMSWKRLCQNKE-RGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSPSITWRSIFWDRELFLKGLKWRVGNEKLIDI

Query:  EKDPWIQNRELSP
          D WI +    P
Subjt:  EKDPWIQNRELSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTTCCAGAAGAATGAGGATTTGCTTCTATCTGAGTGGGATGCCTCTAGCCGAGAATCTGAGTCTTTGGCTAGATGGCATATTCAAAATGTCAATGGCAACTTGAG
GGATGAAGTTTTGGTGCACTGGATGAGCTGGAAGAGACTATGCCAAAACAAAGAGAGGGGAGGCATGAGCTTTAGAGAAATAGCTTCTTTCAACCAAGTAATGCTTGCGA
AGCAAAGCTGGAGAATCCTGAAAAATCCAAATAGCCTCCTCTTTGAGACTCTTCAAGGAGGATGTTTCAGGAATGAAAATTTCTTGGATGCAAAGCTAGGAAACTCTCCA
TCCATCACATGGAGAAGCATTTTCTGGGACAGAGAGCTTTTCTTAAAGGGCCTTAAATGGAGAGTGGGCAACGAGAAGCTCATTGATATAGAAAAAGACCCTTGGATTCA
GAATCGGGAGCTCAGCCCCTACGTTACAAAAGACAACCTCAAGGGCCTTAGAGTCAGCAGCCTGCTGGACGACAACAACAGATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTTCCAGAAGAATGAGGATTTGCTTCTATCTGAGTGGGATGCCTCTAGCCGAGAATCTGAGTCTTTGGCTAGATGGCATATTCAAAATGTCAATGGCAACTTGAG
GGATGAAGTTTTGGTGCACTGGATGAGCTGGAAGAGACTATGCCAAAACAAAGAGAGGGGAGGCATGAGCTTTAGAGAAATAGCTTCTTTCAACCAAGTAATGCTTGCGA
AGCAAAGCTGGAGAATCCTGAAAAATCCAAATAGCCTCCTCTTTGAGACTCTTCAAGGAGGATGTTTCAGGAATGAAAATTTCTTGGATGCAAAGCTAGGAAACTCTCCA
TCCATCACATGGAGAAGCATTTTCTGGGACAGAGAGCTTTTCTTAAAGGGCCTTAAATGGAGAGTGGGCAACGAGAAGCTCATTGATATAGAAAAAGACCCTTGGATTCA
GAATCGGGAGCTCAGCCCCTACGTTACAAAAGACAACCTCAAGGGCCTTAGAGTCAGCAGCCTGCTGGACGACAACAACAGATGGTAG
Protein sequenceShow/hide protein sequence
MLFQKNEDLLLSEWDASSRESESLARWHIQNVNGNLRDEVLVHWMSWKRLCQNKERGGMSFREIASFNQVMLAKQSWRILKNPNSLLFETLQGGCFRNENFLDAKLGNSP
SITWRSIFWDRELFLKGLKWRVGNEKLIDIEKDPWIQNRELSPYVTKDNLKGLRVSSLLDDNNRW