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Lag0006273 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006273
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:40375125..40375640
RNA-Seq ExpressionLag0006273
SyntenyLag0006273
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]5.2e-0734.38Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLN-CIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISV
        +N D AW  + GRGG+GWV+RD  G  I  G     +     M EAEA+ E L  C++  + +      +ESD+L +IK+LN E+    +++ I   +  
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLN-CIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISV

Query:  TASNAFVVDFLHCNRILNTVVHCVAQEA
         +  A  V+FL+  R  N   H VA  A
Subjt:  TASNAFVVDFLHCNRILNTVVHCVAQEA

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]6.6e-1033.93Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLN---CIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAI
        +N   +W E+ G+GG+ WV+ DS GS IC   K + + W +KMLE +A++EGL     I++T   +  P +     LE+ ++LN    DL +L  + D I
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLN---CIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAI

Query:  SVTASNAFVVDF
              A ++ F
Subjt:  SVTASNAFVVDF

TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]4.0e-0729.92Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT
        +N D ++  + G+ G+G ++RD  GS I      +     ++MLEA+A LEG++   D      I   IESDA  VI++L+ +    ++L  I       
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT

Query:  ASNAFVVDFLHCNRILNTVVHCVAQEA
         ++  ++ ++   R  N+V HC+AQ A
Subjt:  ASNAFVVDFLHCNRILNTVVHCVAQEA

XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]1.8e-0729.41Show/hide
Query:  NLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVTA
        N D  W ++   GG+GWV+RD NG  +  G K +     +   E EA+   +  +     +N      ESD+  ++++LN EEE    +K +  AIS + 
Subjt:  NLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVTA

Query:  SNAFVVDFLHCNRILNTVVHCVAQEACNFSFVVDQL
        S    V+  +  R  N + H +A+E   F+ +V +L
Subjt:  SNAFVVDFLHCNRILNTVVHCVAQEACNFSFVVDQL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.5e-0932.28Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT
        +N D +W +   RGGIGW++R  +G  +  G + +     +K+LEA AILEGL  + +       P  IE+D+ EV  +LN + EDL+    + + I   
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT

Query:  ASNAFVVDFLHCNRILNTVVHCVAQEA
          +  ++ F    R  N   H +AQ A
Subjt:  ASNAFVVDFLHCNRILNTVVHCVAQEA

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein2.5e-0734.38Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLN-CIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISV
        +N D AW  + GRGG+GWV+RD  G  I  G     +     M EAEA+ E L  C++  + +      +ESD+L +IK+LN E+    +++ I   +  
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLN-CIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISV

Query:  TASNAFVVDFLHCNRILNTVVHCVAQEA
         +  A  V+FL+  R  N   H VA  A
Subjt:  TASNAFVVDFLHCNRILNTVVHCVAQEA

A0A5C7H0P0 Uncharacterized protein1.9e-0729.92Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT
        +N D ++  + G+ G+G ++RD  GS I      +     ++MLEA+A LEG++   D      I   IESDA  VI++L+ +    ++L  I       
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT

Query:  ASNAFVVDFLHCNRILNTVVHCVAQEA
         ++  ++ ++   R  N+V HC+AQ A
Subjt:  ASNAFVVDFLHCNRILNTVVHCVAQEA

A0A6J1D5W1 uncharacterized protein LOC1110173291.3e-0627.91Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT
        +N D AW+   G GG+GW++R+        G +TIT    I  LE  AI  G+  +      + +  +IES++LE I ++ G +++++++  +   I   
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT

Query:  ASNAFVVDFLHCNRILNTVVHCVAQEACN
           A +  F H  R  N+V   +A  A +
Subjt:  ASNAFVVDFLHCNRILNTVVHCVAQEACN

A0A6J1DNV9 uncharacterized protein LOC1110224034.6e-0932.28Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT
        +N D +W +   RGGIGW++R  +G  +  G + +     +K+LEA AILEGL  + +       P  IE+D+ EV  +LN + EDL+    + + I   
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT

Query:  ASNAFVVDFLHCNRILNTVVHCVAQEA
          +  ++ F    R  N   H +AQ A
Subjt:  ASNAFVVDFLHCNRILNTVVHCVAQEA

A0A6P5S2T0 uncharacterized protein LOC1107519137.3e-0731.58Show/hide
Query:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT
        +N DVAW+ +  RGG+GWV+RDS+G  +C G +   +     ++E  AI   L+     ++   +  ++ESD    I +LNG+    SDL+ I   I   
Subjt:  MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVT

Query:  ASNAFVVDFL----HCNRILNTVVHCVAQEACN
         +    V F+     CNR+ +TV   V++   N
Subjt:  ASNAFVVDFL----HCNRILNTVVHCVAQEACN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.8e-0530.08Show/hide
Query:  NLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTI--TKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLI-ESDALEVIKVLNGEEEDLSDLKTITDAIS
        N D  W  ++ R GIGW++R+ +G  +  G + +  TKN    +LEAE  LE L     T  +    ++I ESDA  ++ +LN  ++    L+   + I 
Subjt:  NLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTI--TKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLI-ESDALEVIKVLNGEEEDLSDLKTITDAIS

Query:  VTASNAFVVDFLHCNRILNTVVHCVAQEACNFS
            +   V F    R  N V   +A+E+ +FS
Subjt:  VTASNAFVVDFLHCNRILNTVVHCVAQEACNFS

AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-0629.46Show/hide
Query:  NLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVTA
        N D  W   + R GIGWV+R+  G     G + + K   +   E EA+   +  +   ++ N +  + ESD+  +I++LN +E   S   TI D +    
Subjt:  NLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVTA

Query:  SNAFVVDFLHCNRILNTVVHCVAQEACNF
        S    V F+   R  NT+   VA+E+ +F
Subjt:  SNAFVVDFLHCNRILNTVVHCVAQEACNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGGATGTCGCTTGGTATGAGAAAGATGGACGAGGAGGGATAGGTTGGGTCGTGCGTGACTCAAATGGTTCCCCGATTTGTTTTGGGATGAAGACAATCACCAA
AAATTGGCCAATTAAAATGTTGGAAGCAGAGGCAATCCTTGAAGGTCTCAATTGCATCAAGGATACCTACAAGCAAAATCAAATTCCCCAGTTAATTGAATCGGACGCGT
TGGAAGTTATCAAAGTGCTGAACGGTGAGGAAGAAGACTTATCAGATCTGAAGACCATTACAGATGCGATCTCCGTAACAGCTTCTAACGCCTTTGTCGTGGATTTTCTC
CATTGCAATAGAATTTTGAACACAGTAGTGCACTGTGTTGCCCAAGAGGCATGTAATTTTTCTTTTGTTGTTGATCAATTGGCGTTAAACGATTATGATCAAGATAGAGA
CCATGTTTTTTGGGCCCTAATTTCCCTTGTTTGGTGTATCCCTCTATTTCAAGAGGGAGGATTATTTTCTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGGATGTCGCTTGGTATGAGAAAGATGGACGAGGAGGGATAGGTTGGGTCGTGCGTGACTCAAATGGTTCCCCGATTTGTTTTGGGATGAAGACAATCACCAA
AAATTGGCCAATTAAAATGTTGGAAGCAGAGGCAATCCTTGAAGGTCTCAATTGCATCAAGGATACCTACAAGCAAAATCAAATTCCCCAGTTAATTGAATCGGACGCGT
TGGAAGTTATCAAAGTGCTGAACGGTGAGGAAGAAGACTTATCAGATCTGAAGACCATTACAGATGCGATCTCCGTAACAGCTTCTAACGCCTTTGTCGTGGATTTTCTC
CATTGCAATAGAATTTTGAACACAGTAGTGCACTGTGTTGCCCAAGAGGCATGTAATTTTTCTTTTGTTGTTGATCAATTGGCGTTAAACGATTATGATCAAGATAGAGA
CCATGTTTTTTGGGCCCTAATTTCCCTTGTTTGGTGTATCCCTCTATTTCAAGAGGGAGGATTATTTTCTCCTTAG
Protein sequenceShow/hide protein sequence
MNLDVAWYEKDGRGGIGWVVRDSNGSPICFGMKTITKNWPIKMLEAEAILEGLNCIKDTYKQNQIPQLIESDALEVIKVLNGEEEDLSDLKTITDAISVTASNAFVVDFL
HCNRILNTVVHCVAQEACNFSFVVDQLALNDYDQDRDHVFWALISLVWCIPLFQEGGLFSP