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Lag0006308 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006308
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:41033910..41041365
RNA-Seq ExpressionLag0006308
SyntenyLag0006308
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEE54705.1 hypothetical protein OsJ_02026 [Oryza sativa Japonica Group]1.0e-0442.17Show/hide
Query:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQHFEKSSLFSVKSGYRLAQQGDIL--SRQSSSNSDSLRCWWVRFWNMHIP
        G  LL+ GL WRIGDGT            DF   H+EKS +FSV+S YRLA           SS  +DS R  W R W+  +P
Subjt:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQHFEKSSLFSVKSGYRLAQQGDIL--SRQSSSNSDSLRCWWVRFWNMHIP

PKA49974.1 Putative ribonuclease H protein [Apostasia shenzhenica]3.0e-0428.26Show/hide
Query:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQ---------------------------------------------------------HFEKSSLFS
        GRDLL+ GL WRIG+G SV  +G   LPR  SFQ                                                         H++K   +S
Subjt:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQ---------------------------------------------------------HFEKSSLFS

Query:  VKSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIP
        VKSGY    QG+  S  +SS++     WW + W+  IP
Subjt:  VKSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIP

TKW24503.1 hypothetical protein SEVIR_3G054800v2 [Setaria viridis]1.7e-0434.91Show/hide
Query:  DFSFQHFEKSSLFSVKSGYRLA-----QQGDIL-SRQSSSNSDSLRCWWVRFWNMHIPASSVCDAESDGPI--NRDHVRWLAPSEPAFKLNTDAVVRSDG
        DF   H+E+S +FSVKS YR+      Q+ D L SR  +SN +  R  W  FW        V  +E   P+   +   +W+APS+   K N D V+   G
Subjt:  DFSFQHFEKSSLFSVKSGYRLA-----QQGDIL-SRQSSSNSDSLRCWWVRFWNMHIPASSVCDAESDGPI--NRDHVRWLAPSEPAFKLNTDAVVRSDG

Query:  ARAGVG
        ++  VG
Subjt:  ARAGVG

XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]6.6e-0425.36Show/hide
Query:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQ--------------------------------------------------------HFEKSSLFSV
        GR+++ KGL WRI DG  V  Y S  LPR  +F+                                                        H++K   +SV
Subjt:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQ--------------------------------------------------------HFEKSSLFSV

Query:  KSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIPAS--------SVCDAES------------------DGPINRDHVRWLAPSEPAFKLNTDAVVR
        KSGY+LA Q    +R SSS     +  W   W + IP          SV  AE+                      +++H  W  P    FK+N DA V+
Subjt:  KSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIPAS--------SVCDAES------------------DGPINRDHVRWLAPSEPAFKLNTDAVVR

Query:  SDGARAGVG
         D  R G+G
Subjt:  SDGARAGVG

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.2e-0731.65Show/hide
Query:  GRDLLRKGLNWRIGDGTSVGFYGSN--------------RLP-------------------------------------------RDFSFQHFEKSSLFS
        GRDLL+KGL WRIG+G SV  YG N              RLP                                            D    ++EK+ ++S
Subjt:  GRDLLRKGLNWRIGDGTSVGFYGSN--------------RLP-------------------------------------------RDFSFQHFEKSSLFS

Query:  VKSGYRLA-QQGDILSRQSSSNSDSLRCWWVRFWNMHIP
        V+SGY++A      +   SSS+S+ +RCWW  FW MHIP
Subjt:  VKSGYRLA-QQGDILSRQSSSNSDSLRCWWVRFWNMHIP

TrEMBL top hitse value%identityAlignment
A0A4U6V9T4 Uncharacterized protein8.5e-0534.91Show/hide
Query:  DFSFQHFEKSSLFSVKSGYRLA-----QQGDIL-SRQSSSNSDSLRCWWVRFWNMHIPASSVCDAESDGPI--NRDHVRWLAPSEPAFKLNTDAVVRSDG
        DF   H+E+S +FSVKS YR+      Q+ D L SR  +SN +  R  W  FW        V  +E   P+   +   +W+APS+   K N D V+   G
Subjt:  DFSFQHFEKSSLFSVKSGYRLA-----QQGDIL-SRQSSSNSDSLRCWWVRFWNMHIPASSVCDAESDGPI--NRDHVRWLAPSEPAFKLNTDAVVRSDG

Query:  ARAGVG
        ++  VG
Subjt:  ARAGVG

A0A6J1DAR4 uncharacterized protein LOC1110189541.1e-0731.65Show/hide
Query:  GRDLLRKGLNWRIGDGTSVGFYGSN--------------RLP-------------------------------------------RDFSFQHFEKSSLFS
        GRDLL+KGL WRIG+G SV  YG N              RLP                                            D    ++EK+ ++S
Subjt:  GRDLLRKGLNWRIGDGTSVGFYGSN--------------RLP-------------------------------------------RDFSFQHFEKSSLFS

Query:  VKSGYRLA-QQGDILSRQSSSNSDSLRCWWVRFWNMHIP
        V+SGY++A      +   SSS+S+ +RCWW  FW MHIP
Subjt:  VKSGYRLA-QQGDILSRQSSSNSDSLRCWWVRFWNMHIP

A0A803Q2D0 Uncharacterized protein1.3e-0532.61Show/hide
Query:  LYASQLFRYVEFFE---GSVVEEASGPEGVGIFPMALFLMLSWVIVLRLSSVAYCGGRDLLRKGLNWRIGDGTSVGFYGSNRLPR-DFSFQHFEKSSLFS
        L A Q +R ++ F+   G V++          F    F+     I+  L+  + C GRDLL KGL W+IG+G           PR D    H   +  ++
Subjt:  LYASQLFRYVEFFE---GSVVEEASGPEGVGIFPMALFLMLSWVIVLRLSSVAYCGGRDLLRKGLNWRIGDGTSVGFYGSNRLPR-DFSFQHFEKSSLFS

Query:  VKSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIP
        VK GY LA   D +   SSS+S   R WW R W + +P
Subjt:  VKSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIP

A0A803QQN3 Uncharacterized protein1.1e-0434.86Show/hide
Query:  CGGRDLLRKGLNWRIGDGTSV-----------------GFYGSNRL--------PR-DFSFQHFEKSSLFSVKSGYRLAQQGDILSRQSSSNSDSLRCWW
        C GRDLL KGL W+IG G  V                  + G  R+        PR D  F H   + ++S+K+GY LA+   I     SS+S S R WW
Subjt:  CGGRDLLRKGLNWRIGDGTSV-----------------GFYGSNRL--------PR-DFSFQHFEKSSLFSVKSGYRLAQQGDILSRQSSSNSDSLRCWW

Query:  VRFWNMHIP
         R W++ +P
Subjt:  VRFWNMHIP

B9EX92 Reverse transcriptase domain-containing protein5.0e-0542.17Show/hide
Query:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQHFEKSSLFSVKSGYRLAQQGDIL--SRQSSSNSDSLRCWWVRFWNMHIP
        G  LL+ GL WRIGDGT            DF   H+EKS +FSV+S YRLA           SS  +DS R  W R W+  +P
Subjt:  GRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQHFEKSSLFSVKSGYRLAQQGDIL--SRQSSSNSDSLRCWWVRFWNMHIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCATGCTCCTAGGGTTTTTAGGAATTTGGGAGCGTTTCGGGACGAACCAGGCGGAACCGGGACGGCTAGAGGCCGTAGGGACGAAGTAGAGGCAAACGAACTCGG
CCCACATAAGCGGGCCGAGTGGTCGGGCCGAGTTGGTTTTCTTCTCTCTAGCGTCTTTAGTTCGTTAGTCGTGTCGCCGTCCTCGCTTCGCCAGCAACCTCACCGCTCCA
CCATGCCATTGTTGCAGGACCCTCAGCCAACGCGAGAACTACCTGTTGACATCTCTATCGACGTTGATAGAGGCCTTCTCTCTCGACGTCGTTTATATCGACGTCGAGAG
AGGGCATGTTATCCTGTCTCGTGGGCTCCGCCAAGGAGACCCCTTGTCACTTTACTTGGTCCTTTTGTGTGCTGGGGGTTAATCCTGCCTGTTACAAGGGGCAGAAAGGA
AAGGTCTAATATCAGGGGGAGTGGTGCAACAATATTTGAGTCAAATTTTGGTGTGGCTCGGTCTCTGTCATCAGCAATATTTGGGTCTACCTTCCTTTATGCCTCACAAT
TGTTCAGGTACGTTGAGTTTTTTGAAGGATCGGTTGTGGAAGAGGCTTCAGGTCCGGAAGGAGTCGGTATTTTCCCCATGGCACTCTTCTTGATGCTGAGCTGGGTAATC
GTTCTTCGTTTATCTAGCGTAGCTTATTGTGGGGGACGTGATTTATTGCGTAAGGGGTTGAATTGGCGAATCGGTGATGGAACCTCAGTTGGGTTTTATGGTTCTAATCG
GTTGCCTCGTGACTTCTCCTTCCAACACTTTGAGAAATCGAGTCTGTTTTCTGTCAAGAGTGGATATCGGTTAGCTCAGCAAGGGGATATTCTCAGTCGCCAATCTTCTT
CGAACTCTGATTCATTGAGATGCTGGTGGGTTCGATTCTGGAATATGCACATTCCAGCTTCTTCAGTCTGTGATGCAGAGTCAGATGGTCCAATTAACAGAGATCATGTA
CGTTGGTTGGCCCCGTCTGAACCAGCTTTTAAATTGAATACAGATGCTGTTGTTCGTTCGGATGGGGCTCGTGCTGGCGTTGGCAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCATGCTCCTAGGGTTTTTAGGAATTTGGGAGCGTTTCGGGACGAACCAGGCGGAACCGGGACGGCTAGAGGCCGTAGGGACGAAGTAGAGGCAAACGAACTCGG
CCCACATAAGCGGGCCGAGTGGTCGGGCCGAGTTGGTTTTCTTCTCTCTAGCGTCTTTAGTTCGTTAGTCGTGTCGCCGTCCTCGCTTCGCCAGCAACCTCACCGCTCCA
CCATGCCATTGTTGCAGGACCCTCAGCCAACGCGAGAACTACCTGTTGACATCTCTATCGACGTTGATAGAGGCCTTCTCTCTCGACGTCGTTTATATCGACGTCGAGAG
AGGGCATGTTATCCTGTCTCGTGGGCTCCGCCAAGGAGACCCCTTGTCACTTTACTTGGTCCTTTTGTGTGCTGGGGGTTAATCCTGCCTGTTACAAGGGGCAGAAAGGA
AAGGTCTAATATCAGGGGGAGTGGTGCAACAATATTTGAGTCAAATTTTGGTGTGGCTCGGTCTCTGTCATCAGCAATATTTGGGTCTACCTTCCTTTATGCCTCACAAT
TGTTCAGGTACGTTGAGTTTTTTGAAGGATCGGTTGTGGAAGAGGCTTCAGGTCCGGAAGGAGTCGGTATTTTCCCCATGGCACTCTTCTTGATGCTGAGCTGGGTAATC
GTTCTTCGTTTATCTAGCGTAGCTTATTGTGGGGGACGTGATTTATTGCGTAAGGGGTTGAATTGGCGAATCGGTGATGGAACCTCAGTTGGGTTTTATGGTTCTAATCG
GTTGCCTCGTGACTTCTCCTTCCAACACTTTGAGAAATCGAGTCTGTTTTCTGTCAAGAGTGGATATCGGTTAGCTCAGCAAGGGGATATTCTCAGTCGCCAATCTTCTT
CGAACTCTGATTCATTGAGATGCTGGTGGGTTCGATTCTGGAATATGCACATTCCAGCTTCTTCAGTCTGTGATGCAGAGTCAGATGGTCCAATTAACAGAGATCATGTA
CGTTGGTTGGCCCCGTCTGAACCAGCTTTTAAATTGAATACAGATGCTGTTGTTCGTTCGGATGGGGCTCGTGCTGGCGTTGGCAATGCTTGA
Protein sequenceShow/hide protein sequence
MFHAPRVFRNLGAFRDEPGGTGTARGRRDEVEANELGPHKRAEWSGRVGFLLSSVFSSLVVSPSSLRQQPHRSTMPLLQDPQPTRELPVDISIDVDRGLLSRRRLYRRRE
RACYPVSWAPPRRPLVTLLGPFVCWGLILPVTRGRKERSNIRGSGATIFESNFGVARSLSSAIFGSTFLYASQLFRYVEFFEGSVVEEASGPEGVGIFPMALFLMLSWVI
VLRLSSVAYCGGRDLLRKGLNWRIGDGTSVGFYGSNRLPRDFSFQHFEKSSLFSVKSGYRLAQQGDILSRQSSSNSDSLRCWWVRFWNMHIPASSVCDAESDGPINRDHV
RWLAPSEPAFKLNTDAVVRSDGARAGVGNA