CuGenDBv2

Gene ID	Lag0006311
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr6:41062389..41063655
RNA-Seq Expression	Lag0006311
Synteny	Lag0006311
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.8e-42

52.88

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        M TTK+EIE+FNG  DF+LW+KRIQ +L  Q+ALK ++DPK LP T+ EV+KQ ME+  Y  LILNIT+NVLRQ+I+E TT+ I  KL ALY KKD+ SK
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKSENK
        +Y+RE+LF+FKMN SKTL+ENLDEFKKLT +F   GEKLR                                  +I A+K KELEL+ E K
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKSENK

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-41

61.87

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        MTTTK+EIEKF+GN DF+LW+KRI  +L  Q ALKALEDPK LP T+T+ E++ +E++AY+TLI+NIT+NVLRQ+I+ETT F  W KL++LY KKD+ +K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL
        ++++E+LF+FK N +K LDENLDEFKKLT      GEKL
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL

KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

1.6e-38

60.28

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        MTTTK+EIEKF+GN DF+L +KRI  +L  Q ALKALEDPK L  T+T+ E++ +E++AY TLI+NIT NVLRQII+ETT F  W KL++LY KKD+ +K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLRI
        +++R++LF+FKMN +K LDE LDEFKKLT       EKLR+
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLRI

TYK27655.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.2e-38

49.26

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPK------------TLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKL
        M TTK+EIE+FNG  DF+LW+KRIQ +L  Q+ALKA++DPK             LP T+TEV+KQ ME+  Y  LILNIT+NV RQ+I+E TT+ IW KL
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPK------------TLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKL

Query:  QALYIKKDVSSKIYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKS
         ALY KKD+ SK+Y+R+  F+ KMN SKTL+ENLDEFKKLT +F   GEKLR                                  +I A+K KELEL+ 
Subjt:  QALYIKKDVSSKIYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKS

Query:  ENK
        E K
Subjt:  ENK

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.9e-56

47.6

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        MTTTK+EIEKF+GN DF+L +KRI   L  Q ALKALEDPK LP T+T+ E++ +E++AY+TLI+NIT+NVLRQ+I+ETT F  W  L++LY KKD+S+K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL----------------------------------RIILAIKCKELELKSENKGNGGAESLF
        +++RE+LF+FKMN +K LDENLDEFKKLT       EKL                                   +I A+K KELELK+ENK +  AESLF
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL----------------------------------RIILAIKCKELELKSENKGNGGAESLF

Query:  TKGKNPSKKSRFSKGHKNFKGKTVLKCFICHKEGHFKRNCPKERREIIEEAGNMENEMSLLGKSSERRFQR
        +KG N  +K+  +K  ++ + K  LKCFICHKEGHFKRNCP   +    +             +  R +QR
Subjt:  TKGKNPSKKSRFSKGHKNFKGKTVLKCFICHKEGHFKRNCPKERREIIEEAGNMENEMSLLGKSSERRFQR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.8e-43

52.88

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        M TTK+EIE+FNG  DF+LW+KRIQ +L  Q+ALK ++DPK LP T+ EV+KQ ME+  Y  LILNIT+NVLRQ+I+E TT+ I  KL ALY KKD+ SK
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKSENK
        +Y+RE+LF+FKMN SKTL+ENLDEFKKLT +F   GEKLR                                  +I A+K KELEL+ E K
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKSENK

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.7e-42

61.87

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        MTTTK+EIEKF+GN DF+LW+KRI  +L  Q ALKALEDPK LP T+T+ E++ +E++AY+TLI+NIT+NVLRQ+I+ETT F  W KL++LY KKD+ +K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL
        ++++E+LF+FK N +K LDENLDEFKKLT      GEKL
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass

7.7e-39

60.28

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        MTTTK+EIEKF+GN DF+L +KRI  +L  Q ALKALEDPK L  T+T+ E++ +E++AY TLI+NIT NVLRQII+ETT F  W KL++LY KKD+ +K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLRI
        +++R++LF+FKMN +K LDE LDEFKKLT       EKLR+
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLRI

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-56

47.6

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        MTTTK+EIEKF+GN DF+L +KRI   L  Q ALKALEDPK LP T+T+ E++ +E++AY+TLI+NIT+NVLRQ+I+ETT F  W  L++LY KKD+S+K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL----------------------------------RIILAIKCKELELKSENKGNGGAESLF
        +++RE+LF+FKMN +K LDENLDEFKKLT       EKL                                   +I A+K KELELK+ENK +  AESLF
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKL----------------------------------RIILAIKCKELELKSENKGNGGAESLF

Query:  TKGKNPSKKSRFSKGHKNFKGKTVLKCFICHKEGHFKRNCPKERREIIEEAGNMENEMSLLGKSSERRFQR
        +KG N  +K+  +K  ++ + K  LKCFICHKEGHFKRNCP   +    +             +  R +QR
Subjt:  TKGKNPSKKSRFSKGHKNFKGKTVLKCFICHKEGHFKRNCPKERREIIEEAGNMENEMSLLGKSSERRFQR

A0A5D3DWH4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-39

49.26

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPK------------TLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKL
        M TTK+EIE+FNG  DF+LW+KRIQ +L  Q+ALKA++DPK             LP T+TEV+KQ ME+  Y  LILNIT+NV RQ+I+E TT+ IW KL
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPK------------TLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKL

Query:  QALYIKKDVSSKIYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKS
         ALY KKD+ SK+Y+R+  F+ KMN SKTL+ENLDEFKKLT +F   GEKLR                                  +I A+K KELEL+ 
Subjt:  QALYIKKDVSSKIYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR----------------------------------IILAIKCKELELKS

Query:  ENK
        E K
Subjt:  ENK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.5e-11

27.07

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        M   K  I+ F+G   +++W  RI+ +L +Q  LK ++    +PN V +  K K E+ A +T+I  ++++ L     + T   I   L A+Y +K ++S+
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR------------------IILAI---------------KCKELELKSENKGNGGAESLF-
        + LR+RL + K++   +L  +   F +L ++   AG K+                   II AI               +  + E+K +N  N  ++ +  
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR------------------IILAI---------------KCKELELKSENKGNGGAESLF-

Query:  -------TKGKNPSKKSRFSKGHKNFKG--KTVLKCFICHKEGHFKRNCPKERREIIEEAGNMENE
                  KN   K+R +K  K FKG  K  +KC  C +EGH K++C   +R  I    N ENE
Subjt:  -------TKGKNPSKKSRFSKGHKNFKG--KTVLKCFICHKEGHFKRNCPKERREIIEEAGNMENE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-23

28.63

Show/hide

Query:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK
        M+  KYE+ KFNG+N FS W +R++ +L+QQ   K L+     P+T+   +   +++ A + + L+++++V+  IIDE T  GIW +L++LY+ K +++K
Subjt:  MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSK

Query:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR-----IIL--------------------AIKCKE------LELKSENKGNGGAESLFTKG
        +YL+++L+   M+       +L+ F  L T+ A  G K+      I+L                     I+ K+      L  K   K     ++L T+G
Subjt:  IYLRERLFTFKMNGSKTLDENLDEFKKLTTKFAVAGEKLR-----IIL--------------------AIKCKE------LELKSENKGNGGAESLFTKG

Query:  KNPS-KKSRFSKGHKNFKGKT-------VLKCFICHKEGHFKRNCPKERREIIEEAGNMENE
        +  S ++S  + G    +GK+       V  C+ C++ GHFKR+CP  R+   E +G   ++
Subjt:  KNPS-KKSRFSKGHKNFKGKT-------VLKCFICHKEGHFKRNCPKERREIIEEAGNMENE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTACTACAAAATATGAGATCGAGAAATTCAATGGAAATAATGATTTTAGCCTATGGAGTAAAAGGATTCAGGTAGTTCTTTTACAACAATCTGCACTTAAAGCATT
GGAAGATCCAAAGACTTTGCCAAATACGGTTACAGAAGTGGAGAAACAGAAGATGGAAAAAATAGCCTATGCTACCCTTATTTTGAATATTACTAATAATGTTCTTAGAC
AAATCATCGATGAAACCACAACATTTGGTATTTGGGGAAAACTGCAGGCACTTTATATTAAGAAAGATGTATCAAGCAAGATTTATCTTAGAGAGAGGTTGTTCACTTTC
AAGATGAATGGTTCTAAAACGCTTGACGAGAATCTTGATGAATTCAAGAAACTCACCACTAAATTTGCAGTTGCTGGAGAAAAATTGAGAATTATCTTAGCAATTAAATG
TAAAGAACTTGAGTTGAAATCAGAAAACAAAGGAAATGGAGGAGCCGAGTCTCTTTTTACAAAAGGTAAGAATCCTTCCAAGAAAAGCAGATTCTCAAAGGGTCACAAGA
ATTTTAAAGGCAAGACTGTTTTGAAATGTTTCATTTGTCACAAAGAAGGACATTTCAAACGCAATTGTCCTAAAGAACGAAGGGAGATTATAGAAGAGGCAGGGAACATG
GAAAATGAGATGTCTCTATTGGGGAAAAGCTCAGAAAGACGATTCCAACGCAACTTGAATCGCTCAAATCGGAGTTCAAACGAGAAAGTTATAAGCAAAAGAATATTGGA
GAAGAAAATCCAACGTGGCAGTGACACGTGGTACTACGCTGACGTGGCATCCGACGTGGCGGCTGACAAGGACGGTCAACGGTCCACTTTTATGACGTGGCAGATGACGT
GGCATCTCAAACGGTCAAATTTTGCTGATGTGGCGATGACATGGCAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTTTKYEIEKFNGNNDFSLWSKRIQVVLLQQSALKALEDPKTLPNTVTEVEKQKMEKIAYATLILNITNNVLRQIIDETTTFGIWGKLQALYIKKDVSSKIYLRERLFTF
KMNGSKTLDENLDEFKKLTTKFAVAGEKLRIILAIKCKELELKSENKGNGGAESLFTKGKNPSKKSRFSKGHKNFKGKTVLKCFICHKEGHFKRNCPKERREIIEEAGNM
ENEMSLLGKSSERRFQRNLNRSNRSSNEKVISKRILEKKIQRGSDTWYYADVASDVAADKDGQRSTFMTWQMTWHLKRSNFADVAMTWQ

Lag0006311 (gene) of Sponge gourd (AG-4) v1 genome